Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00469 ATGATTCTCATTATCTCCCTCATTTTTTCTCTTCTCTCTTTCTCCCATGCTTCTGTCCTAGATTTCTGTGTTGCAGATTATGCAGGTCCTATTGGACCTGCAGGATATTCCTGCAAGAAGCCTTCAAAGGTCACAGCAGATGATTTTGCTTACAGTGGCCTTGGCATTGCTGGTAACACCTCAAACATTATCAAAGCTGCAGTGACCCCTGCATTTGATGCTCAGTTTGCTGGTCTCAACGGTCTTGGCATTTCCGCAGCACGTTTGGACTTAGCAGCAGGTGGAGTTATACCACTTCACACTCATCCTGGAGCTTCAGAATTACTTGTTGTAATTGAAGGGAGCATCCTAGCTGGATTCATTTCTTCTGCCAACATTGTCTACCTCAAAACTCTTAAGAAGGGGGATGTTATGGCATTCCCTCAAGGCTTGCTTCATTTCCAAATCAATGCAGGCAAATCTTCAGCCCTGGCAATTGTAAGCTTCAGTAGCTCCAATCCTGGTCTACAAATTCTGGACTTCGCTTTGTTCAAAAGTAGTTTCCCCACACCATTGATAGTACAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGGTGTACTTGGAGGCTCAGGCTAA 627 0.4466 MILIISLIFSLLSFSHASVLDFCVADYAGPIGPAGYSCKKPSKVTADDFAYSGLGIAGNTSNIIKAAVTPAFDAQFAGLNGLGISAARLDLAAGGVIPLHTHPGASELLVVIEGSILAGFISSANIVYLKTLKKGDVMAFPQGLLHFQINAGKSSALAIVSFSSSNPGLQILDFALFKSSFPTPLIVQTTFLDAALVKKLKGVLGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00469 208 Pfam Cupin 55 189 IPR006045 -
Gma17g00469 208 CDD cupin_OxOx 15 204 - -
Gma17g00469 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 204 - -
Gma17g00469 208 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Gma17g00469 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Gma17g00469 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Gma17g00469 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Gma17g00469 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Gma17g00469 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Gma17g00469 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 204 - -
Gma17g00469 208 SMART Cupin_1_3 52 198 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00469 Gma-Chr17 3858913 3859945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00469 1 207 Miscellaneous Gene Families AT5G20630 70.192 5.32e-99 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00469 - - gmx:100800387 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00469 17 3858913 3859945 Gma17g00469 17 3858913 3859945 ECH
Gma17g00469 17 3858913 3859945 Gma15g01650 15 17072397 17073461 PCT
Gma15g01650 15 17072397 17073461 Gma17g00469 17 3858913 3859945 PCT