Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01650 ATGAAGAAGATGATTCTAACCCTCTTCTTCAATATCATTTTATCTCTCCTCTCCCTCTCCCACGCCTCCGTGGTGGATTTCTGCGTAGCAGACTACACAGGCCCCAATGGCCCCGCAGGGTACTCATGCAAGAGCCCAGCAAAGGTCACGGTGGACGACTTCGTCTACTCCGGCCTTGGCACCGCCGGCAACACCTCAAACATCATCAAAGCCGCGGTGACGCCGGCGTTCGACGCGCAATTCCCCGGCGTCAACGGGCTTGGAATCTCCATTGCACGCCTAGACCTAGCAGCCGGTGGAGTCATCCCTCTTCACACGCACCCTGGTGCCTCAGAGCTGCTGGTGGTTGTGCAGGGAACAATCTGCACCGGCTTCGTTGCTTCGGACAACACTGTGTACCTCAAAACCCTAAAAAAGGGTGATGTCATGGTGTACCCTCAGGGCTTGTTGCACTTCCAGATCAACGATGGAGAGTCTCAGGCTTTGGCTTTTGTGAGCTTCAGCAGTGCTAACCCTGGCCTCCAGATTCTGGACTTTTCTTTGTTCAAGAGTGATTTCCCCACTGAGCTTATCACGCAAACCACTTTCATTGATGCTGCAGTTGTCAAGAAGCTCAAGGGTGTTCTTGGAGGGTCAGGTTAA 642 0.5358 MKKMILTLFFNIILSLLSLSHASVVDFCVADYTGPNGPAGYSCKSPAKVTVDDFVYSGLGTAGNTSNIIKAAVTPAFDAQFPGVNGLGISIARLDLAAGGVIPLHTHPGASELLVVVQGTICTGFVASDNTVYLKTLKKGDVMVYPQGLLHFQINDGESQALAFVSFSSANPGLQILDFSLFKSDFPTELITQTTFIDAAVVKKLKGVLGGSG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01650 213 CDD cupin_OxOx 21 209 - -
Gma15g01650 213 SUPERFAMILY RmlC-like cupins 24 207 IPR011051 -
Gma15g01650 213 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Gma15g01650 213 PRINTS Germin signature 135 155 IPR001929 GO:0030145
Gma15g01650 213 PRINTS Germin signature 168 183 IPR001929 GO:0030145
Gma15g01650 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 209 - -
Gma15g01650 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 12 209 - -
Gma15g01650 213 Gene3D Jelly Rolls 21 212 IPR014710 -
Gma15g01650 213 SMART Cupin_1_3 57 203 IPR006045 -
Gma15g01650 213 Pfam Cupin 58 201 IPR006045 -
Gma15g01650 213 ProSitePatterns Germin family signature. 100 113 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01650 Gma-Chr15 17072397 17073461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01650 3 212 Miscellaneous Gene Families AT5G20630 68.246 9.61e-103 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01650 - - gmx:100806553 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01650 15 17072397 17073461 Gma15g01650 15 17072397 17073461 ECH
Gma17g00469 17 3858913 3859945 Gma15g01650 15 17072397 17073461 PCT
Gma15g01650 15 17072397 17073461 Gma17g00469 17 3858913 3859945 PCT