Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00461 ATGGCACGCTTGTCACTGCTCATTTTCGCGTTCTGcgccgtcgccgtcgccgtcgccgtcgcGGGCTCCTCCTTCGATGATGCCAACCCTATCCGTTTAGCGTCGGACTTGGAGTCGCAGGTGCTGGACGTGATCGGACAGAGCCGCCACGCTCTCTCCTTCGCCCGCTTCGCTCGCCGCCACGGCAAGCGCTACCGTTCCGTCGACGAGATCCGCAACCGCTTCCGGATCTTCTCTGATAATCTTAAACTCATCAGATCCACCAACAGGAGGTCTCTCACCTACACGCTCGGCGTCAATCATTTTGCTGACTGGACTTGGGAGGAGTTCACCAGACACAAGCTCGGCGCTCCTCAGAATTGCTCTGCCACGCTCAAAGGCAACCACAGGCTCACCGATGCTGTTCTTCCTGACGAGAAAGACTGGAGAAAAGAAGGTATAGTCAGCCAAGTTAAAGATCAAGGCAACTGCGGATCTTGCTGGACATTCAGCACAACTGGTGCATTGGAGGCAGCTTACGCACAGGCCTTTGGGAAGAATATCAGTCTTTCTGAGCAGCAGCTAGTGGACTGTGCCGGTGCTTTCAATAACTTTGGCTGTAATGGTGGTTTGCCATCCCAAGCCTTTGAATACATTAAATACAATGGTGGCCTCGACACAGAAGAAGCATATCCCTACACCGGAAAAGATGGTGTCTGCAAATTTACAGCTAAAAACGTTGCTGTTCGAGTCATTGACTCTATCAATATCACTTTGGGTGCTGAGGATGAATTGAAACAAGCGGTTGCTTTTGTTCGGCCAGTTAGTGTGGCATTTGAGGTAGCGAAGGACTTCCGATTCTACAATAATGGAGTTTACACTAGTACCATTTGTGGTAGCACGCCCATGGATGTAAATCATGCTGTTCTTGCTGTTGGGTATGGAGTTGAAGATGGTGTTCCATATTGGATCATTAAAAATTCATGGGGAAGCAACTGGGGTGACAATGGTTACTTCAAGATGGAATTAGGGAAGAATATGTGCGGTGTTGCAACTTGTGCATCTTATCCTGTTGTGGCTTAA 1062 0.4774 MARLSLLIFAFCAVAVAVAVAGSSFDDANPIRLASDLESQVLDVIGQSRHALSFARFARRHGKRYRSVDEIRNRFRIFSDNLKLIRSTNRRSLTYTLGVNHFADWTWEEFTRHKLGAPQNCSATLKGNHRLTDAVLPDEKDWRKEGIVSQVKDQGNCGSCWTFSTTGALEAAYAQAFGKNISLSEQQLVDCAGAFNNFGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFTAKNVAVRVIDSINITLGAEDELKQAVAFVRPVSVAFEVAKDFRFYNNGVYTSTICGSTPMDVNHAVLAVGYGVEDGVPYWIIKNSWGSNWGDNGYFKMELGKNMCGVATCASYPVVA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00461 353 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Gma17g00461 353 SMART pept_c1 136 351 IPR000668 GO:0006508|GO:0008234
Gma17g00461 353 PRINTS Papain cysteine protease (C1) family signature 154 169 IPR000668 GO:0006508|GO:0008234
Gma17g00461 353 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Gma17g00461 353 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Gma17g00461 353 Gene3D Cysteine proteinases 45 352 - -
Gma17g00461 353 PANTHER THIOL PROTEASE ALEURAIN 30 350 - -
Gma17g00461 353 SUPERFAMILY Cysteine proteinases 49 351 IPR038765 -
Gma17g00461 353 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 350 - -
Gma17g00461 353 Pfam Papain family cysteine protease 136 351 IPR000668 GO:0006508|GO:0008234
Gma17g00461 353 CDD Peptidase_C1A 137 350 IPR039417 -
Gma17g00461 353 SMART Inhibitor_I29_2 54 110 IPR013201 -
Gma17g00461 353 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
Gma17g00461 353 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 154 165 IPR000169 -
Gma17g00461 353 Pfam Cathepsin propeptide inhibitor domain (I29) 54 110 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00461 Gma-Chr17 3807119 3809885 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00461 K01366 - gmx:100787165 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00461 17 3807119 3809885 Gma17g00461 17 3807119 3809885 ECH
Gma17g00461 17 3807119 3809885 Gma15g01659 15 17166253 17172152 PCT
Gma17g00461 17 3807119 3809885 Gma09g00639 09 7232406 7237286 PCT
Gma15g01659 15 17166253 17172152 Gma17g00461 17 3807119 3809885 PCT
Gma09g00639 09 7232406 7237286 Gma17g00461 17 3807119 3809885 PCT