Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00639 ATGGCGCGGTTGATCACAGTGGTGTGGTGCGCGGTGGCGGTGCTATTATGCGCCGCGGCCGGTGCGTCGTGGGTGGAGGAGGCGGCGAACCCGATACGAATGGTGTCTGGCGTGGAGGCGGAGGTGGTTCGGGTGATCGGGGAGTGCCGGCGTGCGTTGAAGTTTGCTAGGTTCGTGAGCAGGTTCGGGAAGAGTTACCAAAGCGAGGAAGAGATGAAGGAGAGGTACGAGATATTCTCGCAGAATCTCAGGTTCATCCGCTCCCACAACAAGAAGCGTTTGCCCTATACTCTCTCTGTTAATCATTTTGCTGATTGGACTTGGGAGGAGTTCAAAAGACACAGACTAGGAGCTGCCCAAAATTGCTCTGCCACTCTTAACGGCAACCACAAGCTCACCGATGCTGTTCTTCCTCCAACGAAAGACTGGAGAAAAGAAGGTATAGTGAGTTCAGTTAAAGATCAAGGCAGCTGCGGATCATGCTGGACATTCAGCACAACTGGGGCTTTAGAAGCAGCCTATGCACAAGCATTTGGGAAGAGTATCTCTCTTTCTGAGCAGCAGCTAGTGGACTGTGCTGGCCCTTTCAACAACTTTGGCTGCCATGGTGGGTTGCCATCACAAGCCTTTGAGTACATTAAATACAATGGTGGACTAGAGACAGAGGAAGCATATCCCTACACAGGAAAAGATGGTGTCTGCAAATTCTCAGCTGAAAATGTTGCTGTTCAAGTCCTTGACTCTGTGAATATCACCTTGGGTGCTGAAGATGAACTAAAACATGCAGTTGCATTTGTTCGGCCAGTTAGTGTGGCCTTTCAGGTGGTGAATGGGTTCCATTTCTACGAGAATGGAGTTTTCACTAGTGACACTTGTGGTAGCACTTCCCAGGATGTGAACCATGCCGTTCTTGCTGTTGGATATGGAGTTGAAAATGGTGTCCCATATTGGCTCATAAAAAATTCATGGGGAGAAAGCTGGGGTGAAAATGGCTACTTCAAGATGGAATTGGGGAAGAACATGTGTGGTGTTGCAACTTGTGCATCTTATCCAATTGTGGCATAA 1065 0.4911 MARLITVVWCAVAVLLCAAAGASWVEEAANPIRMVSGVEAEVVRVIGECRRALKFARFVSRFGKSYQSEEEMKERYEIFSQNLRFIRSHNKKRLPYTLSVNHFADWTWEEFKRHRLGAAQNCSATLNGNHKLTDAVLPPTKDWRKEGIVSSVKDQGSCGSCWTFSTTGALEAAYAQAFGKSISLSEQQLVDCAGPFNNFGCHGGLPSQAFEYIKYNGGLETEEAYPYTGKDGVCKFSAENVAVQVLDSVNITLGAEDELKHAVAFVRPVSVAFQVVNGFHFYENGVFTSDTCGSTSQDVNHAVLAVGYGVENGVPYWLIKNSWGESWGENGYFKMELGKNMCGVATCASYPIVA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00639 354 PRINTS Papain cysteine protease (C1) family signature 155 170 IPR000668 GO:0006508|GO:0008234
Gma09g00639 354 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Gma09g00639 354 PRINTS Papain cysteine protease (C1) family signature 316 322 IPR000668 GO:0006508|GO:0008234
Gma09g00639 354 SMART Inhibitor_I29_2 55 111 IPR013201 -
Gma09g00639 354 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 155 166 IPR000169 -
Gma09g00639 354 Pfam Cathepsin propeptide inhibitor domain (I29) 55 111 IPR013201 -
Gma09g00639 354 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 316 335 IPR025661 -
Gma09g00639 354 PANTHER THIOL PROTEASE ALEURAIN 31 351 - -
Gma09g00639 354 SUPERFAMILY Cysteine proteinases 50 352 IPR038765 -
Gma09g00639 354 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Gma09g00639 354 CDD Peptidase_C1A 138 351 IPR039417 -
Gma09g00639 354 Gene3D Cysteine proteinases 46 353 - -
Gma09g00639 354 Pfam Papain family cysteine protease 137 352 IPR000668 GO:0006508|GO:0008234
Gma09g00639 354 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 351 - -
Gma09g00639 354 SMART pept_c1 137 352 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00639 Gma-Chr9 7232406 7237286 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00639 K01366 - gmx:547734 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00639 09 7232406 7237286 Gma09g00639 09 7232406 7237286 ECH
Gma15g01659 15 17166253 17172152 Gma09g00639 09 7232406 7237286 GST
Gma17g00461 17 3807119 3809885 Gma09g00639 09 7232406 7237286 PCT
Gma09g00639 09 7232406 7237286 Gma17g00461 17 3807119 3809885 PCT