Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00295 ATGTTTCTTGTTGATTGGTTCTATGGAATTTTGGCGACCCTTGGTCTGTGGCAAAAGGAGGCGAAGATTTTGTTCCTAGGGTTAGATAATGCTGGGAAGACCACTTTGCTTCACATGCTCAAAGACGAGAGACTGGTTCAGCATCAACCTACTCAATATCCCACTTCGGAGGAGTTGAGTATTGGGAAGATAAAGTTTAAGGCTTTCGACTTGGGTGGCCACCAGATTGCTCGTAGGGTCTGGAAGGACTATTACGCTCAGGTGGATGCTGTGGTCTTCTTGGTTGATGCATTTGACAAGGAAAGATTTTCAGAATCAAAGAAGGAGTTGGATGCTCTTCTCTCTGATGAGTCACTAGCAAATGTGCCTTTCCTTATCTTGGGAAACAAGATTGATATACCTTATGCTGCCTCAGAGGATGAACTACGCTATAACATGGGTCTCACTAACTTCACTACAGGCAAGGGCAAGGTTAATTTGGTTGACTCCAATGTTCGTCCTTTGGAGGTTTTTATGTGCAGTATTGTCCGCAAGATGGGATATGGTGAAGGCTTTCAGTGGCTCTCTCAGTACATTAAATAG 582 0.4399 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVFLVDAFDKERFSESKKELDALLSDESLANVPFLILGNKIDIPYAASEDELRYNMGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00295 193 SMART arf_sub_2 3 193 - -
Gma17g00295 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Gma17g00295 193 CDD Sar1 2 192 - -
Gma17g00295 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Gma17g00295 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Gma17g00295 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Gma17g00295 193 Gene3D - 1 193 IPR027417 -
Gma17g00295 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Gma17g00295 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Gma17g00295 193 PANTHER PROTEIN SAR1A, PUTATIVE, EXPRESSED-RELATED 1 193 - -
Gma17g00295 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Gma17g00295 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Gma17g00295 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Gma17g00295 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Gma17g00295 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Gma17g00295 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00295 Gma-Chr17 2388388 2390255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00295 19 146 Miscellaneous Gene Families AT5G05670 29.577 3.06e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00295 K07953 - gmx:100815670 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00295 17 2388388 2390255 Gma17g00295 17 2388388 2390255 ECH
Gma17g00295 17 2388388 2390255 Gma19g02171 19 50564891 50566955 ECH
Gma17g00295 17 2388388 2390255 Gma03g02138 03 46865991 46868320 ECH
Gma17g00295 17 2388388 2390255 Gma10g01462 10 41717403 41719934 ECH
Gma17g00295 17 2388388 2390255 Gma20g02232 20 49447507 49450282 ECH
Gma17g00295 17 2388388 2390255 Gma15g01338 15 11894456 11896837 PCT
Gma15g01338 15 11894456 11896837 Gma17g00295 17 2388388 2390255 PCT