Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01338 ATGTTCCTCTTTGACTGGTTCTATGGCATTCTCGCTTCCCTCGGTCTCTGGCAGAAAGAAGCCAAAATTCTCTTCCTTGGTCTCGATAATGCCGGCAAAACCACCCTCCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCACCAGCCGACCCAGCACCCCACTTCGGAGGAATTGAGCATTGGGAAGATCAAGTTTAAGGCTTTCGATTTGGGGGGCCATCAAGTTGCTCGCAGGGTCTGGAAAGACTATTATGCCAAGGTGGATGCTGTTGTGTACCTGGTTGACGCCTTTGACAAAGAGAGGTTCGCAGAATCTAAGAAGGAGCTCGATGCCTTGCTTTCAGATGAATCCTTGGCAAATGTTCCTTTTCTTGTGCTAGGCAACAAGATTGACATCCCTTACGCAGCTTCAGAAGACGAGCTGCGATATCATCTAGGCCTGACCAATTTCACCACAGGCAAGGGAAAGATGAACCTCACAGACTCCAACCTTCGACCCCTTGAAGTGTTCATGTGCAGCATTGTGCGCAAGATGGGGTATGGTGAAGGCTTCCAGTGGCTAAGCCAATACATCAAGTAG 582 0.4897 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVDAVVYLVDAFDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLTNFTTGKGKMNLTDSNLRPLEVFMCSIVRKMGYGEGFQWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01338 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Gma15g01338 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Gma15g01338 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Gma15g01338 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Gma15g01338 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Gma15g01338 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
Gma15g01338 193 CDD Sar1 2 192 - -
Gma15g01338 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Gma15g01338 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Gma15g01338 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Gma15g01338 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Gma15g01338 193 Gene3D - 1 193 IPR027417 -
Gma15g01338 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Gma15g01338 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Gma15g01338 193 SMART arf_sub_2 4 193 - -
Gma15g01338 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01338 Gma-Chr15 11894456 11896837 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01338 K07953 - gmx:100499682 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01338 15 11894456 11896837 Gma15g01338 15 11894456 11896837 ECH
Gma15g01338 15 11894456 11896837 Gma19g02171 19 50564891 50566955 ECH
Gma15g01338 15 11894456 11896837 Gma03g02138 03 46865991 46868320 ECH
Gma15g01338 15 11894456 11896837 Gma10g01462 10 41717403 41719934 ECH
Gma15g01338 15 11894456 11896837 Gma20g02232 20 49447507 49450282 ECH
Gma17g00295 17 2388388 2390255 Gma15g01338 15 11894456 11896837 PCT
Gma15g01338 15 11894456 11896837 Gma17g00295 17 2388388 2390255 PCT