Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00278 ATGGGTGTTTTCACTTCTGAAAGCGAACACGTTTCCCCCGTCTCTGCTGCAAAATTATACAAAGCTATTGTCCTAGATGCCAGCAATGTCTTCCCAAAAGCATTGCCAAATTTCATTAAGAGCGTAGAAACCATTGAAGGAGATGGAGGGCCAGGAACCATTAAGAAGCTTACTCTTGCTGAAGGTTTAGGTTATGTGAAGCACCACGTAGATGCAATTGACACAGAAAACTATGTGTACAACTATAGTGTGATTGAAGGCAGTGCATTGTCGGAGCCATTGGAGAAGATATGTTATGAGTACAAACTGGTGGCAACCCCAGATGGAGGATCCATTGTGAAGTCCACAAGCAAATACTATACCAAAGGTGATGAGCAACTCGCCGAAGAATATGTGAAGACTGGCAAGGAGAGATCTGCAGGTTTCACCAAGGCTATTGAGGATTTCATTCAGGCTAATCCTGATTACAACTAA 474 0.4304 MGVFTSESEHVSPVSAAKLYKAIVLDASNVFPKALPNFIKSVETIEGDGGPGTIKKLTLAEGLGYVKHHVDAIDTENYVYNYSVIEGSALSEPLEKICYEYKLVATPDGGSIVKSTSKYYTKGDEQLAEEYVKTGKERSAGFTKAIEDFIQANPDYN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00278 157 Pfam Pathogenesis-related protein Bet v 1 family 1 150 IPR000916 GO:0006952
Gma17g00278 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gma17g00278 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gma17g00278 157 PRINTS Major pollen allergen Bet V1 signature 64 83 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gma17g00278 157 PRINTS Major pollen allergen Bet V1 signature 83 96 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gma17g00278 157 PRINTS Major pollen allergen Bet V1 signature 108 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gma17g00278 157 PRINTS Major pollen allergen Bet V1 signature 142 152 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gma17g00278 157 PANTHER - 1 157 - -
Gma17g00278 157 PANTHER NODULIN-13 1 157 - -
Gma17g00278 157 Gene3D - 1 157 IPR023393 -
Gma17g00278 157 SUPERFAMILY Bet v1-like 2 157 - -
Gma17g00278 157 CDD Bet_v1-like 4 147 - -
Gma17g00278 157 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 87 119 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00278 Gma-Chr17 2242856 2244084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00278 - - gmx:100306363 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00278 17 2242856 2244084 Gma17g00278 17 2242856 2244084 ECH
Gma17g00278 17 2242856 2244084 Gma15g01367 15 12190462 12195141 PCT
Gma15g01368 15 12198944 12200331 Gma17g00278 17 2242856 2244084 PCT
Gma09g00368 09 3441148 3443814 Gma17g00278 17 2242856 2244084 PCT