Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01305 ATGGCTAGCGAGAGAATTCTCAAGCCATCAAAGTGGTTCTCAAACAAAACTCTAAGAATTAGTCTTCATCGCCGAAGATCAAGATCCTCCTCCAATAACTCATTATCTAGTAATTCTCCAAGTCCAAGATCCCCCATGTCAAACAATGGAGAGATCACTGGGCTAATGGAGGCTTTTCGTCACTTTGATAATGATGGAGATGGGAAAATCTCGGCCTATGAGCTAAGGTCATATTTTGGGTCCATTGGGGATCACATGTCTCATGAGGAGGCTGAAGGGGTCATCCATGACCTAGATTCCGATGGGGACAACTTGTTGGACTTCAAGGATTTCACCAAGCTCATGAAGCGAGATGTTGGTGATGATCATGATGATGAGGGGGATCTAAGAAGGGCTTTTGAGATGTTTGTGTGGGAGAAAGAAGGGAGTGGTTGCATCACCCCGAAAGGGTTGCAAAGGATGTTGCATCGCCTTGGTGATGACAAATCCTATGATGAGTGTGTGACCATGATTGATGCCTTTGACATTGATCACAACGGGGTCCTTGATTTCGATGAGTTTTACCAAATGATGGCCTAA 579 0.4473 MASERILKPSKWFSNKTLRISLHRRRSRSSSNNSLSSNSPSPRSPMSNNGEITGLMEAFRHFDNDGDGKISAYELRSYFGSIGDHMSHEEAEGVIHDLDSDGDNLLDFKDFTKLMKRDVGDDHDDEGDLRRAFEMFVWEKEGSGCITPKGLQRMLHRLGDDKSYDECVTMIDAFDIDHNGVLDFDEFYQMMA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01305 192 ProSiteProfiles EF-hand calcium-binding domain profile. 162 192 IPR002048 GO:0005509
Gma16g01305 192 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Gma16g01305 192 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
Gma16g01305 192 SUPERFAMILY EF-hand 42 191 IPR011992 -
Gma16g01305 192 MobiDBLite consensus disorder prediction 23 51 - -
Gma16g01305 192 Gene3D - 121 192 - -
Gma16g01305 192 Gene3D - 42 120 - -
Gma16g01305 192 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 17 192 - -
Gma16g01305 192 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Gma16g01305 192 PANTHER CALCIUM BINDING PROTEIN 17 192 - -
Gma16g01305 192 MobiDBLite consensus disorder prediction 27 51 - -
Gma16g01305 192 Pfam EF-hand domain pair 143 191 IPR002048 GO:0005509
Gma16g01305 192 SMART efh_1 166 192 IPR002048 GO:0005509
Gma16g01305 192 SMART efh_1 90 118 IPR002048 GO:0005509
Gma16g01305 192 SMART efh_1 54 82 IPR002048 GO:0005509
Gma16g01305 192 SMART efh_1 128 158 IPR002048 GO:0005509
Gma16g01305 192 CDD EFh 55 116 IPR002048 GO:0005509
Gma16g01305 192 Pfam EF-hand domain pair 55 116 IPR002048 GO:0005509
Gma16g01305 192 ProSitePatterns EF-hand calcium-binding domain. 175 187 IPR018247 -
Gma16g01305 192 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Gma16g01305 192 CDD EFh 128 192 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01305 Gma-Chr16 31703140 31704037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01305 1 192 EF-hand Containing Proteins AT3G50770 50.971 1.73e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01305 K13448 - gmx:100500092 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01305 16 31703140 31704037 Gma16g01305 16 31703140 31704037 ECH
Gma02g00544 02 5408634 5409578 Gma16g01305 16 31703140 31704037 ECH
Gma16g01305 16 31703140 31704037 Gma02g00544 02 5408634 5409578 GST