Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00544 ATGGCCAGTGAGAGAATTCTCAAGCCATCTAAATGGTTCTCAAACAAATCACTAAAGCTTAGTCTTCATCGTGGAAGATCAAGATCCTCCTCCAATAACTCATTATCGAGTAACTCTCCCAGTCCAAGATCACCCATGTCGAATAATCGAGAGATCAATGGGCTAATGGAGGCTTTTCGTCACTTTGATAATGATGGAGATGGGAAAATATCGGCCTATGAGCTAAGGTCATATTTTGGGTCCATTGGGGAGCACATGTCTCATGAGGAGGCTGAAGGGGTCATCCATGACCTAGATTCCGATGGGGACAACTTGTTGGACTTCAAGGATTTCACCAAGCTCATGAAGAGGGATGTTGGTGGTGATGAGCATGATGATGAAGGGGATCTAAGAAGGGCTTTTGAGATGTTTGTGTGGGAGAAAGAAGGGTGTGGTTGCATCACCCCAAAAGGGTTGCAAAGGATGTTGCATCGCCTTGGTGATGACAAGTCCTATGATGAGTGTGTGGCCATGATTGATGCCTTTGACATTGATCACAACGGGCTCCTTGATTTCGATGAGTTTTACCAAATGATGGCCTAA 582 0.4502 MASERILKPSKWFSNKSLKLSLHRGRSRSSSNNSLSSNSPSPRSPMSNNREINGLMEAFRHFDNDGDGKISAYELRSYFGSIGEHMSHEEAEGVIHDLDSDGDNLLDFKDFTKLMKRDVGGDEHDDEGDLRRAFEMFVWEKEGCGCITPKGLQRMLHRLGDDKSYDECVAMIDAFDIDHNGLLDFDEFYQMMA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00544 193 MobiDBLite consensus disorder prediction 24 50 - -
Gma02g00544 193 Gene3D - 121 193 - -
Gma02g00544 193 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Gma02g00544 193 Pfam EF-hand domain pair 55 116 IPR002048 GO:0005509
Gma02g00544 193 Pfam EF-hand domain pair 145 192 IPR002048 GO:0005509
Gma02g00544 193 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 17 193 - -
Gma02g00544 193 SUPERFAMILY EF-hand 42 192 IPR011992 -
Gma02g00544 193 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Gma02g00544 193 ProSitePatterns EF-hand calcium-binding domain. 176 188 IPR018247 -
Gma02g00544 193 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
Gma02g00544 193 SMART efh_1 90 118 IPR002048 GO:0005509
Gma02g00544 193 SMART efh_1 54 82 IPR002048 GO:0005509
Gma02g00544 193 SMART efh_1 167 193 IPR002048 GO:0005509
Gma02g00544 193 MobiDBLite consensus disorder prediction 22 50 - -
Gma02g00544 193 CDD EFh 129 193 IPR002048 GO:0005509
Gma02g00544 193 PANTHER CALCIUM BINDING PROTEIN 17 193 - -
Gma02g00544 193 CDD EFh 55 116 IPR002048 GO:0005509
Gma02g00544 193 Gene3D - 14 120 - -
Gma02g00544 193 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Gma02g00544 193 ProSiteProfiles EF-hand calcium-binding domain profile. 163 193 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00544 Gma-Chr2 5408634 5409578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00544 1 193 EF-hand Containing Proteins AT3G50770 53.623 1.56e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00544 K13448 - gmx:100306370 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00544 02 5408634 5409578 Gma02g00544 02 5408634 5409578 ECH
Gma02g00544 02 5408634 5409578 Gma16g01305 16 31703140 31704037 ECH
Gma16g01305 16 31703140 31704037 Gma02g00544 02 5408634 5409578 GST