Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01279 ATGATAAAAGCAGTGCTGGTGTTGAACACGGAGGGGAAGCCTCGTCTCGCCAAATTCTACCAATTTCAGTCTGTGGAGAAGCAGCATGAAGCTATTCGCAATGTGTTTTCAGTCTTATGCTGTAGACCTGAACATGTCAGCAATTTTGTGGATGCCGAGTCCTTCTTTGGCCCGGACTCTCGCCTTGTCTACAAGCACTTTGCAACTTTATATTTCATGTTCATATTTGATAGTTCTGAAAACGAGCTTGCTATGCTTGACTTGATACAAGTGTTTGTTGAAACATTGGACAAATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAGATGCATACCATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACAAGTTCAAACGAGGTTATGAAGGCTATTGAAGAAATATCAAGGCTTGAATCAGCATCCAATGCAATCAACCTTGTTCCAAAATCTGTTTCTGGTTGGAGGTCACGATAA 501 0.4152 MIKAVLVLNTEGKPRLAKFYQFQSVEKQHEAIRNVFSVLCCRPEHVSNFVDAESFFGPDSRLVYKHFATLYFMFIFDSSENELAMLDLIQVFVETLDKCFRNVCELDIVFNYSKMHTILDEIILGGQVLETSSNEVMKAIEEISRLESASNAINLVPKSVSGWRSR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01279 166 SUPERFAMILY SNARE-like 1 144 IPR011012 -
Gma16g01279 166 PIRSF AP_complex_sigma 1 156 IPR016635 GO:0015031
Gma16g01279 166 PANTHER AP COMPLEX SUBUNIT SIGMA 1 157 - -
Gma16g01279 166 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886|GO:0016192|GO:0030117
Gma16g01279 166 Gene3D - 1 159 - -
Gma16g01279 166 Pfam Clathrin adaptor complex small chain 1 145 IPR022775 -
Gma16g01279 166 CDD AP3_sigma 1 145 IPR027155 GO:0006896|GO:0030123
Gma16g01279 166 Coils Coil 129 149 - -
Gma16g01279 166 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 1 157 IPR016635 GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01279 Gma-Chr16 31293716 31298034 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01279 K12399 - gmx:100781795 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01279 16 31293716 31298034 Gma16g01279 16 31293716 31298034 ECH
Gma16g01279 16 31293716 31298034 Gma02g00516 02 5141012 5144859 GST