Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01258 ATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCTCTGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCGAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACGGCTGCCCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGCAAATTGGCGACAAGATGAAGGGCTTCTTAATCACTATGGTTATGGGGGCCAAATACGTGTTATATAA 1287 0.4305 MEKLASSSTATVVPTQHFLFQFHQHSLFFFPKTAFSTFHRNRTEPLSLLCCKSRHRRLEALSSKQDQLWVSEEELELELEEGEDSYLDGDDDDDDSSFLSLSDKPDRNMAMLDDYEGEELDFDYGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHLLDSMMMKNVRSAAVNADCVLVLVDARKTPEKIDGLLEEGIGDLKDKPPTLLILNKKDLVKPGELAKKLEWYEKFTEVDEVIPVSAKYGQGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVNYKARPNAKEYIQVEILVEKNTQKIILIGREGKALKLLATAARLDVEDFLQKKVYLEIEVKVRANWRQDEGLLNHYGYGGQIRVI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01258 428 Hamap GTPase Era [era]. 128 421 IPR005662 GO:0003723|GO:0005525
Gma16g01258 428 Pfam 50S ribosome-binding GTPase 133 250 IPR006073 GO:0005525
Gma16g01258 428 Gene3D - 311 425 IPR015946 -
Gma16g01258 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 331 IPR027417 -
Gma16g01258 428 TIGRFAM era: GTP-binding protein Era 131 404 IPR005662 GO:0003723|GO:0005525
Gma16g01258 428 TIGRFAM small_GTP: small GTP-binding protein domain 133 292 IPR005225 GO:0005525
Gma16g01258 428 PANTHER GTPASE ERA 81 422 IPR005662 GO:0003723|GO:0005525
Gma16g01258 428 Gene3D - 126 310 IPR027417 -
Gma16g01258 428 MobiDBLite consensus disorder prediction 80 97 - -
Gma16g01258 428 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 81 422 - -
Gma16g01258 428 Pfam KH domain 333 410 IPR004044 GO:0003723
Gma16g01258 428 ProSiteProfiles Type-2 KH domain profile. 330 407 IPR004044 GO:0003723
Gma16g01258 428 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 306 421 IPR009019 GO:0003723
Gma16g01258 428 CDD Era 128 297 IPR030388 GO:0005525
Gma16g01258 428 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 129 299 IPR030388 GO:0005525
Gma16g01258 428 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01258 Gma-Chr16 30782121 30786785 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01258 K03595 - gmx:100815820 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01258 16 30782121 30786785 Gma16g01258 16 30782121 30786785 ECH
Gma16g01258 16 30782121 30786785 Gma02g00493 02 4975393 4980751 GST