Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01249 ATGTCCTTCTTGGCCCCCGCGAAGGCGCTGCTCTCGGCGGCGGCCTCTCTGGCCGCCACCGCAATGGTGGTCCGCTCCGTGGCGTGCGACCTCCTTCCGTCGGAGCTCCGATCCTTCATCAGCAACGGCATCCACAGCATGTTCTCGCGCTTCTCCCCGGACATAACCCTAATCATCGAAGAGATGGACGACCTCGACAACAACCAAATCTACGAAGCCGCGGAAACCTACCTCAGCTCCAAAATCTCTCCCACCACACAGAGACTCAAGGTGAGTAACCCGGTGACAGACAAAACCTTCGCCCTCACCATGGAGCCCAACGAACCCCTAACGGACGTTTTCAGAAGCGTGAAGTTTATCTGGATCCTCGTTTGCCGTCAGTTGGAGTCCCACAGCTTCTACAACCCGCGCGACCTGAAATCCACCTTGAAATCAGAGTTTCGCTCGCTGGAACTCACTTTTCACAAGAAGCACAAGGAGATGGTACTCAACACCTACATTCCCTATATTCTCCAACAAGCCAAGTCAATTAAGCAGGAAACGAAGGCGCTTAAGATCTTCACTGTGGACTACCAGAACATTTACGGCAACATCGGTGACGCCTGGGTGGGGATAAATCTGAACCACCCGGCCACGTTCGACACGCTGGCGATGGAGCGCGTCGTGAAAGAGTTTGTCATGAAGGACTTGGAGAGGTTCGTGAGGAGGAAAGAGTATTATAGGAGAGTTGGCAAGGCGTGGAAGAGAGGGTATTTGATGCATGGTCCCCCGGGCACTGGGAAATCGAGCCTCATTGCTGCTATGGCGAATTACTTGAAGTTTGATGTCTATGACTTGGAGCTCACGGAGCTGCAGGTTAACTCGGAGCTCAGGAGGCTGCTCATTGGCATGGCGAATAGGTCTATTCTTGTCGTGGAGGACATTGATTGCACTGCTGAGTTTCATGATCGGAGAACTAGGTCCAGAGCTGCTTCTGGAAATAACAACGATACACAGCTTACACTATCGGGGTTGCTGAATTTCATTGATGGGTTATGGTCAAGTTGTGGGGATGAGAGGATCATAGTGTTCACAACAAACCACAAGGGCAAGCTTGACCCTGCATTGCTTCGCCCTGGTCGAATGGATGTTCACATTCACATGTCCTACTGCACTCCCTGTGGTTTCAGGCAGCTAGCTTCCAATTACCTAGGAATCAAAGAGCATTCTCTCTTTGAACAGATCGAGGAAGAGATGCAGAAAACCCAGGTGACTCCTGCTGAGGTGGAATCGCAATGTAACAACGACGAGGTCGGAGAACAGGGAACTTGA 1311 0.5179 MSFLAPAKALLSAAASLAATAMVVRSVACDLLPSELRSFISNGIHSMFSRFSPDITLIIEEMDDLDNNQIYEAAETYLSSKISPTTQRLKVSNPVTDKTFALTMEPNEPLTDVFRSVKFIWILVCRQLESHSFYNPRDLKSTLKSEFRSLELTFHKKHKEMVLNTYIPYILQQAKSIKQETKALKIFTVDYQNIYGNIGDAWVGINLNHPATFDTLAMERVVKEFVMKDLERFVRRKEYYRRVGKAWKRGYLMHGPPGTGKSSLIAAMANYLKFDVYDLELTELQVNSELRRLLIGMANRSILVVEDIDCTAEFHDRRTRSRAASGNNNDTQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKGKLDPALLRPGRMDVHIHMSYCTPCGFRQLASNYLGIKEHSLFEQIEEEMQKTQVTPAEVESQCNNDEVGEQGT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01249 436 PANTHER PROTEIN HYPER-SENSITIVITY-RELATED 4-LIKE 5 430 - -
Gma16g01249 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 426 IPR027417 -
Gma16g01249 436 SMART AAA_5 247 385 IPR003593 -
Gma16g01249 436 PANTHER BCS1 AAA-TYPE ATPASE 5 430 - -
Gma16g01249 436 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Gma16g01249 436 Gene3D - 380 433 - -
Gma16g01249 436 Gene3D - 203 379 IPR027417 -
Gma16g01249 436 CDD AAA 248 383 - -
Gma16g01249 436 Pfam ATPase family associated with various cellular activities (AAA) 252 382 IPR003959 GO:0005524|GO:0016887
Gma16g01249 436 Pfam Domain associated at C-terminal with AAA 32 125 IPR025753 -
Gma16g01249 436 MobiDBLite consensus disorder prediction 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01249 Gma-Chr16 30604396 30607476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01249 227 408 Miscellaneous Gene Families AT3G47060 30.526 4.56e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01249 - K08900 gmx:100788906 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00487 02 4917100 4919646 Gma16g01249 16 30604396 30607476 ECH
Gma16g01249 16 30604396 30607476 Gma16g01249 16 30604396 30607476 ECH