Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00487 ATGTCCTTCTTTTCCTCCTCCAACCTGGCCACCGCCAAGACGGTGCTCTCGGCGGCGGCCTCGGTGGCTGCCACCGCAATGGTGGTCCGCTCCGTGGCGAGCGACCTCCTTCCGTCGGAGCTCCGGTCCTACATCACCAACGGCATCCACAGCATGTTCTGGCGCTTCTCCTCCGAGATAACCCTGGTCATCGACGAGTTCGACGGCCTCCTCAACAACCAAATCTACGAGGCCGCCGAAACCTACCTCGGCGCCAAAATCTCTCCCAACACACGCAGACTTAAAGTCAGCAAGCCCGAGACAGACACAACCTTCGCCCTCACAATGGAGCGCAACGAGTCCTTAACCGACGTTTTCAGAAGCATGAAATTTAACTGGGTTCTCGTCTGCCGTCAGGTCGAGTCCAGAGGCTTCCACAACCCTCGCGACCTCAACGCCACCATGAAATCCGAGGTTCGCTCCCTCGAACTCACTTTTAACAAGAAGCATAAAGACATGGTGCTCCAAACCTATCTTCCCTATATCCTCAACGAAGCCAAGTCCATGAAACAAGCTACAAAAGCGCTTAAGATCTTCACAGTCGACTACCAGAACATGTACGGCAACATCAGCGACGCGTGGGTGGGGATGAAGCTGgaccatcccgccacgttcgacacgctggcgatggagcgtggcgcgaaggagtttgtcatgagggacttggagaggttcgtaaagaggaaggagtattataggagagttgggaaggcgtggaagagagggtatttgctgtatggtcctcccggcaccgggaaatcgagcttgattgctgccatggcgaattacttgaagtttgatgtgtatgatttggagctgacggagctgaatgctaactcggagctcaggaggttgctcattgcaatggcgaataggtccattcttgttgtggaggacattgattgcactgttgaGTTTCATGATCGGAGAGCTGAGGCCAGAGCTGCTTCTGGACATAACAACGACAGACAGgttacactatcggggttgcttaatttcattgatgggttatggtcaagttgtggggatgagaggatcatagtgttcacaacaaaccacaaggacaagcttgaccctgcattgctgcgccctggtcgaatggatgttcacattcacatgtcctattgcactccctgtggtttcaggcagctagcttccaattacctcggaatcaaagagcattctctcttcgaaaagatcgaggaagagatgcagaaaacccaggtgactcctgctgaggtagcagaacagcttctgaagagcagccacatcgaaactagcctcgaacagcttatagatttcatgagaaagaagaaagaaactcagaaattggaggctaaaaagaaggaacaagaggccaaagaggaacagcagaggaaggaaattgatgatggtggtaaaggagaaaaagttgaCAGTGATGATAACAATAATGAAAAGAAAAGTATTACTACCTAG 1497 0.2632 MSFFSSSNLATAKTVLSAAASVAATAMVVRSVASDLLPSELRSYITNGIHSMFWRFSSEITLVIDEFDGLLNNQIYEAAETYLGAKISPNTRRLKVSKPETDTTFALTMERNESLTDVFRSMKFNWVLVCRQVESRGFHNPRDLNATMKSEVRSLELTFNKKHKDMVLQTYLPYILNEAKSMKQATKALKIFTVDYQNMYGNISDAWVGMKLDHPATFDTLAMERGAKEFVMRDLERFVKRKEYYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELTELNANSELRRLLIAMANRSILVVEDIDCTVEFHDRRAEARAASGHNNDRQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDVHIHMSYCTPCGFRQLASNYLGIKEHSLFEKIEEEMQKTQVTPAEVAEQLLKSSHIETSLEQLIDFMRKKKETQKLEAKKKEQEAKEEQQRKEIDDGGKGEKVDSDDNNNEKKSITT 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00487 498 Coils Coil 445 476 - -
Gma02g00487 498 CDD AAA 253 388 - -
Gma02g00487 498 MobiDBLite consensus disorder prediction 454 498 - -
Gma02g00487 498 Pfam ATPase family associated with various cellular activities (AAA) 257 387 IPR003959 GO:0005524|GO:0016887
Gma02g00487 498 PANTHER PROTEIN HYPER-SENSITIVITY-RELATED 4-LIKE 6 477 - -
Gma02g00487 498 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
Gma02g00487 498 Gene3D - 206 384 IPR027417 -
Gma02g00487 498 PANTHER BCS1 AAA-TYPE ATPASE 6 477 - -
Gma02g00487 498 SMART AAA_5 252 390 IPR003593 -
Gma02g00487 498 Pfam Domain associated at C-terminal with AAA 37 130 IPR025753 -
Gma02g00487 498 Gene3D - 385 457 - -
Gma02g00487 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00487 Gma-Chr2 4917100 4919646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00487 217 469 Miscellaneous Gene Families AT3G47060 28.881 1.79e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00487 - K08900 gmx:100788420 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00487 02 4917100 4919646 Gma16g01249 16 30604396 30607476 ECH
Gma02g00487 02 4917100 4919646 Gma02g00487 02 4917100 4919646 ECH