Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01246 ATGTCTGGACCCCTGTCTCCAAAGACATCTCTTGAAAAGAGTGACCGTGTTGGTTCATTGAAGAAAATGCTGAGGAATTCTCTAACAAGGAGTAAGAGGCGAAGCAGCAGCAAGGTCATGTCGGTTGAAATCGAGGATATCCGCGATGCTGAAGAGTCCAAAGCTGTTGATGAGTTCCGTCAAGCTCTTGTCTTGGACGAGCTACTCCCTGAGAAGCACGATGACTATCACATGTTGCTTAGATTCTTGAAGGCCAGGAAATTTGACCTTGAGAAATCTAAGCAAATGTGGTCTGACATGCTTCAATGGAGGAAGGAATTTGGTGCTGACACCATCACTGAGGATTTTGAATTCAAGGAACTCGATGAAGTCCTGCAATATTATCCTCAAGGACATCATGGAGTTGATAAAGATGGACGACCAATTTACATTGAGAGATTGGGCCAAGTAGATGCCACCAAGTTGATGCAAGTCACAACCATGGATCGCTATATCAAATACCATGTCAAGGAGTTCGAGAGGACATTTGATGTGAAATTCGCGGCTTGCACCATTGCTGCAAAGAAACACATCGATCAAAGCACAACCATCCTTGATGTGCAAGGAGTGGGGCTTAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACCCGCCTTCAGAAGATTGACGGTGACAACTACCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACCGTTAAATCCTTCCTTGACCCAAAGACCACATCAAAAATCCATGTTCTTGGCAACAAGTATCAAAGCAAATTGCTTGAGATAATTGATGAGAGTGAGTTGCCAGAGTTTTTGGGAGGTGCTTGCACCTGTGCTGATCAAGGAGGCTGCATGCGCTCTGATAAGGGCCCTTGGAAGGATGCAGATATAATGAAGATGGTTCAAAATGGTGAGCACAAATGTTCAAGGAAATGTGAGGTTCCTGTCATGGAAGAGAAGACAACTTCTGAGGAACACGAGACTCCCAAGTTGGAGGCAAATCTCGCCGCACAATTGTCTTCTGTCTTTGCCGAGGTTCCTGCTTCTAAGGCTTACAACTACGAGGACTTTGTCCCCGAGGCTGATAAGACTGCTTGGAATAAAAAGATGGAAGAAAATGAGAAATTTGCAGTATCCAAAGCTGGAGCAGTCGATGCATACGCCATGGTTGATTCGTTCAAGATTCATGAAAAAGTGAACTCTCAAATCTTCACTGGTGTGATGGCCTTTGTGATGGGCATAGTGACAATGGTGAGGATGACTAAGAACATGCCAAAGAAGCTCACAGACGCCAACTTCTACTCCAACTTTGGTGGCGAATATAAAGGGCAGGCTCCAAATACAGAGGAAATGACTACTATGCCTAACATCTCTGCTCAAGAGTTCATGACTGTGATGAAACGCATGGCTGAGTTGGAAGACAGAATGGTCAACATGAACAACCAGACCACCTGCATGCCACCTGAGAAGGAGGAAATGCTCAATGCTGCTATCAGCAGAGCAGATGCTTTGGAGCAAGAACTCTTGGCAACCAAGAAGGCTTTGGAGGATTCCCTTTCCAAGCAAGAGGAGCTTTCTGCTTACATTGAGAAGAAGAAAAAGAAGAAGAAGTTGTTCGCTTGGTAA 1668 0.4502 MSGPLSPKTSLEKSDRVGSLKKMLRNSLTRSKRRSSSKVMSVEIEDIRDAEESKAVDEFRQALVLDELLPEKHDDYHMLLRFLKARKFDLEKSKQMWSDMLQWRKEFGADTITEDFEFKELDEVLQYYPQGHHGVDKDGRPIYIERLGQVDATKLMQVTTMDRYIKYHVKEFERTFDVKFAACTIAAKKHIDQSTTILDVQGVGLKNFNKHARELITRLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDESELPEFLGGACTCADQGGCMRSDKGPWKDADIMKMVQNGEHKCSRKCEVPVMEEKTTSEEHETPKLEANLAAQLSSVFAEVPASKAYNYEDFVPEADKTAWNKKMEENEKFAVSKAGAVDAYAMVDSFKIHEKVNSQIFTGVMAFVMGIVTMVRMTKNMPKKLTDANFYSNFGGEYKGQAPNTEEMTTMPNISAQEFMTVMKRMAELEDRMVNMNNQTTCMPPEKEEMLNAAISRADALEQELLATKKALEDSLSKQEELSAYIEKKKKKKKLFAW 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01246 555 Gene3D - 19 107 - -
Gma16g01246 555 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 2 552 - -
Gma16g01246 555 Coils Coil 476 496 - -
Gma16g01246 555 PRINTS Cellular retinaldehyde-binding protein signature 78 100 - -
Gma16g01246 555 PRINTS Cellular retinaldehyde-binding protein signature 247 266 - -
Gma16g01246 555 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Gma16g01246 555 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 2 552 - -
Gma16g01246 555 SUPERFAMILY CRAL/TRIO domain 120 316 IPR036865 -
Gma16g01246 555 CDD SEC14 121 288 IPR001251 -
Gma16g01246 555 SMART sec14_4 120 291 IPR001251 -
Gma16g01246 555 Gene3D - 108 320 IPR036865 -
Gma16g01246 555 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Gma16g01246 555 Coils Coil 508 539 - -
Gma16g01246 555 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Gma16g01246 555 Pfam CRAL/TRIO, N-terminal domain 71 99 IPR011074 -
Gma16g01246 555 SUPERFAMILY CRAL/TRIO N-terminal domain 49 116 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01246 Gma-Chr16 30550379 30555413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01246 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 27.236 3.25e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01246 - - gmx:100785716 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00483 02 4891597 4896607 Gma16g01246 16 30550379 30555413 ECH
Gma16g01246 16 30550379 30555413 Gma16g01246 16 30550379 30555413 ECH
Gma12g00363 12 3013114 3018088 Gma16g01246 16 30550379 30555413 ECH
Gma16g01246 16 30550379 30555413 Gma02g00483 02 4891597 4896607 GST