Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00363 ATGTCCGGCCCTCTCGACCGTTTCGCAAGACCCTGTTTTGAAGGTTTCTCCGGGAGTGATGAGAAGAAAGAAAGGAGATCTGATTTTGAGAACTCCGAAGATGAAAGAAGAACGAGAATTGGATCTCTGAAGAAGAAAGCGCTTAACGCGTCCTCCAAGTTCAAGCATTCGCTCAAGAAAAAGAGCAGCAGAAGAAAAAGCGATGGCCGTGTTAGCTCTGTTTCGATCGAAGATGTTCGGAACTTCGAGGAGCAGCAGGCCGTTGATGCATTTCGCCAAGCCTTGATCATGGAAGAATTGCTTCCTGAAAAACACGATGATTACCACGTCATGTTAAGGTTCCTGAAAGCAAGGAAGTTTGATATTGAAAGGGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGTACTGACACTATTATGGAGGATTTTGAGTTCAAAGAAGTAGATGAAGTTGTGAAGTATTATCCACATGGCCATCATGGTGTTGATAAGGAGGGAAGGCCTGTTTACATTGAGAGACTTGGGAAAGTGGATCCGAACAAACTTATGCAGGTTACGACCATGGATAGATATGTAAAATACCATGTGCAGGAGTTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACAATTGCCGCCAAAAGACACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGGGCCTCAAGAACTTTACAAAGTCTGCTCGGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATGTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAGTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGATATAGCTTCTCCAAAAGTGACGAAGAGCTACTCACACCTGAGGTTGACACCTGTTCGGGAGGAAGCTAAGGTAGTTGGAAAGTCGAGCTCTGCTGGTGGTGGTAACTTAGCTGGGTATGATGAATATGTACCAATGGTGGACAAAGCTGTTGATGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTCGGATTGTGGTAGCTCTAACTGTCTTCTTTATGACGCTGTTTACTCTCTTCCATTCATTCGCATGCCGTGTGACCAAGAAACTTCCTGCCGTATCATCTAATGATGATCAGGGCACTTCAGAGCCTACTCTTGATATAACAAAAATAAACAATGATGACTATTGTCCTCCTTCACCAACTCCAGCATATGCAGAGGCAAATCTCCTTTCCTCAATGATGAAAAGGTTAGGTGAGCTTGAAGTGAAGGTTGACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGAAGAATTGCTAAATGCTGCTGTATGTCGGGTGGATGCTTTGGAAGCAGAGTTAATTGCAACTAAGAAGGCTCTTTATGAAGCACTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAGAAGCTAGGTTACGGAAGAAGTTTTGCTGGTGA 1890 0.4407 MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRNFEEQQAVDAFRQALIMEELLPEKHDDYHVMLRFLKARKFDIERAKHMWADMLQWRKEFGTDTIMEDFEFKEVDEVVKYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVQEFEKAFKIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARDLIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLFEIIDASELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRARPVVKVLNSEGKVIAYARPQYPMVKGSDTSTAESGSEAEDIASPKVTKSYSHLRLTPVREEAKVVGKSSSAGGGNLAGYDEYVPMVDKAVDAAWKNQASLQRSQTSKGKPPLPDTPNPPEGIRARIVVALTVFFMTLFTLFHSFACRVTKKLPAVSSNDDQGTSEPTLDITKINNDDYCPPSPTPAYAEANLLSSMMKRLGELEVKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEEARLRKKFCW 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00363 629 MobiDBLite consensus disorder prediction 16 42 - -
Gma12g00363 629 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Gma12g00363 629 Pfam CRAL/TRIO domain 159 320 IPR001251 -
Gma12g00363 629 SUPERFAMILY CRAL/TRIO domain 152 345 IPR036865 -
Gma12g00363 629 Coils Coil 548 568 - -
Gma12g00363 629 Gene3D - 140 350 IPR036865 -
Gma12g00363 629 MobiDBLite consensus disorder prediction 451 465 - -
Gma12g00363 629 MobiDBLite consensus disorder prediction 1 70 - -
Gma12g00363 629 MobiDBLite consensus disorder prediction 49 66 - -
Gma12g00363 629 Pfam CRAL/TRIO, N-terminal domain 103 131 IPR011074 -
Gma12g00363 629 MobiDBLite consensus disorder prediction 451 474 - -
Gma12g00363 629 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Gma12g00363 629 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 624 - -
Gma12g00363 629 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8 3 624 - -
Gma12g00363 629 SMART sec14_4 152 323 IPR001251 -
Gma12g00363 629 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Gma12g00363 629 CDD SEC14 154 321 IPR001251 -
Gma12g00363 629 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Gma12g00363 629 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Gma12g00363 629 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Gma12g00363 629 Gene3D - 72 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00363 Gma-Chr12 3013114 3018088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00363 85 317 Acyl Lipid Metabolism Gene Families AT5G47730 28.099 4.92e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00363 - - gmx:100784405 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00363 12 3013114 3018088 Gma12g00363 12 3013114 3018088 ECH
Gma12g00363 12 3013114 3018088 Gma02g00483 02 4891597 4896607 ECH
Gma12g00363 12 3013114 3018088 Gma16g01246 16 30550379 30555413 ECH
Gma12g00363 12 3013114 3018088 Gma11g01049 11 8917053 8922390 GST