Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01206 ATGTATGATGCTGGTGACCACATGAAATTTGGGTTCCCTTTGGCTTTCACTGCAACCATGTTCTCTTGGGCGATTCTTGAATATGGAGATCGCATGGATGCGGTGAAGCAGCTACACTATGCACTTGACTCGCTGAAGTGGATCACGGATAATCTTGTTAACGCACACCCTTTTCCAGAAGTGCTCTACATTCAGTTGGATCATAATTGCTGGGAAAGGCCTGAAGataaaaaacttcgtaccccattgtccagaggctcttggctatgcgaaggtatgggggagggatgttgtACGCAGCCTTACCCTTGCATATGCAAAGAGGTTGTTTCCGGATTCGAACCCATGACCAACAAGTCACCAAGGCACAACTTTACCGCTGCACCAGGGCTCGCCCTCTGGGAAAGGCCTGAAGATATGAAAGAAAAAAGACCACTTACTCAAGTTAACTCATCTTTTCCAGGAACAGAAGTTGCGGCAGAAACTGCAGCTGCATTGGCCTCAGCATCTCTTGTTTTTAATGAGATCGATTTTGCTTACTCTAGGATTCTCCTACAACATGCTCAACAGCCGTTTATTTTTGCCGATACATATAGAGTTTCCTACAGTACCTGGCTCTATCATGCAACTAAGGATCCATCATATCTAAATTGTGTGACAGAGCAGAATGAGAAAGCATTTGGCAATTTAGAAATTCTTAGTTGGGATGATAAACATGCTGCAACTCAGGTTCTTTTGTCTAGAGTGAATTTCTTTGGTGCAAGTAACATCCCGGATGCGGAGAATCTCGACCTTCAGATGTACAGAGAAACTGCTGAAATCCTCATGTGCATGCTTCTACCTGATTCACCAACAGCCACCACCAACAGAACTGAAAGTGGGCTGATATGGGTGGTACCATGGAACTCTTTGCAACTGTCAGTGGCTTCTGTATTCTTAGCTGTTCTTTATAGGGACTACATGCTGACATCTCAAACTGAAATACTATATTGTAGTGGGAAATTGTATAAGCCAGTAGATCTTCGCAAATTTTCCATTTCTCAGTTTCAGGCAGATTATGTTTTAGGTGAAAATCCTATGAAGATGAGTTATCTTGTGGGATATGGAACTCAATACCCCAAATATTTACATCACAGAGGGTCTTCCATTGCAGTTAATGCTACAACTGGTTGCAAAGATGGATTCAAGTGGTTTGAGTCACCTCACCCTAATCCAAATGTAGCATTTGGGGCACTAGTAGGTGGTCCTTTCTTTAATGAGACATATAATGATTTCAGGAACAACTCAATGCAGTCTGAACCAACCACTTATAATGGCACCTCTTGGTTGCTCTCTTATCTGGCTTGGTTGCTAGTTCCTCCGTAG 1365 0.4073 MYDAGDHMKFGFPLAFTATMFSWAILEYGDRMDAVKQLHYALDSLKWITDNLVNAHPFPEVLYIQLDHNCWERPEDKKLRTPLSRGSWLCEGMGEGCCTQPYPCICKEVVSGFEPMTNKSPRHNFTAAPGLALWERPEDMKEKRPLTQVNSSFPGTEVAAETAAALASASLVFNEIDFAYSRILLQHAQQPFIFADTYRVSYSTWLYHATKDPSYLNCVTEQNEKAFGNLEILSWDDKHAATQVLLSRVNFFGASNIPDAENLDLQMYRETAEILMCMLLPDSPTATTNRTESGLIWVVPWNSLQLSVASVFLAVLYRDYMLTSQTEILYCSGKLYKPVDLRKFSISQFQADYVLGENPMKMSYLVGYGTQYPKYLHHRGSSIAVNATTGCKDGFKWFESPHPNPNVAFGALVGGPFFNETYNDFRNNSMQSEPTTYNGTSWLLSYLAWLLVPP 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01206 454 PANTHER ENDO-1,4-BETA-GLUCANASE 133 203 - -
Gma16g01206 454 PANTHER ENDO-1,4-BETA-GLUCANASE 204 440 - -
Gma16g01206 454 Gene3D - 1 94 IPR012341 GO:0005975
Gma16g01206 454 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 353 379 IPR018221 -
Gma16g01206 454 SUPERFAMILY Six-hairpin glycosidases 2 84 IPR008928 GO:0005975
Gma16g01206 454 Gene3D - 122 451 IPR012341 GO:0005975
Gma16g01206 454 PANTHER ENDO-1,4-BETA-GLUCANASE 1 84 - -
Gma16g01206 454 PANTHER ENDOGLUCANASE 2 133 203 - -
Gma16g01206 454 PANTHER ENDOGLUCANASE 2 1 84 - -
Gma16g01206 454 PANTHER ENDOGLUCANASE 2 204 440 - -
Gma16g01206 454 SUPERFAMILY Six-hairpin glycosidases 132 450 IPR008928 GO:0005975
Gma16g01206 454 Pfam Glycosyl hydrolase family 9 2 78 IPR001701 GO:0004553|GO:0005975
Gma16g01206 454 Pfam Glycosyl hydrolase family 9 133 438 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01206 Gma-Chr16 29678589 29681432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01206 1 438 Glycoside Hydrolase AT1G75680 50.324 4.61e-139 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01206 - K01179 gmx:100812640 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01206 16 29678589 29681432 Gma16g01206 16 29678589 29681432 ECH
Gma02g00447 02 4509236 4512317 Gma16g01206 16 29678589 29681432 ECH