Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01172 ATGTTGCAAGACATGTGGAATGCTCCTCCCGGTTTCAGACCCTCCAAGTCTGCACCTTCTTCTCCGGCGAAGCCTCTTGGGATGGTTCCCAGAACGCGTTCTGAGACCTTCCACGTGGCTCACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAGTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTTATGAAGCAGCAAAATCGGGCCGAAGAAGCCATTGAGGCCATTAAATCGCTTCGAAGTAGATGTTCAGATCAAGCCCAGGAATCTCTCGATAATATCCTCTTGGATCTCTACAAGAGGTGTGGGAGACTTGATGACCAAATTGCTCTATTGAAGCACAAGTTGTATTTGATTCAACAAGGTTTGGCTTTCAATGGCAAGAGAACAAAGACTGCCAGATCTCAAGGAAAAAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCCTATCGCCGCGCACTTTTGATAGCTCCAGACAACAACAAGATGTGCAATCTGGGCATTTGCTTGATGAAGCAAGGAAGAATTGGTGAGGCGAAGGAGACGCTGTACCGCGTAAAGCCTGCGGTGATGGATGGCCCTAGAGGCTCAGATTCTCACCTGAAAGCCTATGAAAGGGCACAGCAAATGCTGAAGGACCTCGAGTCTGAGATGATGAACAAGGGAGGAGTTGATAGGATTGAACAAAGCAGGCTCTTTGAGGCCTTTTTGGGTTCTTCATCAATTTGGCAACCACAGCCTTGCAAGGATCATCACCACACAACCTTGCCAGCAGCAGCAACAACAACAAATTCAGCCAAAATTCATGATGAGTTTGCTGATGAGAACATCAATTCCAACATAATTTCAACAAATCACACAGCACTTCCACCAACTAAGGGTAGCAACAACAACAAACAACTTGGTGCCATTTTGGGGAACTCACTCAATGTTGCAGCCCCTCCATTCTATGCATCATCAAAATCATCTATGTTGAGGGAACCAATTGAGAACCATCTCTCTGAGACACTTAAGAGAACAAGGTCTGGAAATGCTGCAGGGTCCATGAGAGTAGTGAGTGATGTGAGGGATGCCAACAACAACAACAACAACAAGAAGTTGCATGTGGAATTAGGTGTGCCAGTGCCGCAGAACAAAACAAGAAGGCTCTCATCAGAAGATGCTGAGAAGAACAAGTTAACAGACTTAGACTTGTTGCCCGACGACGACGAATTCGAAGAGGCCATTCTTGCAGCAATTTTGGGACCCCCAAACGAATCAGATAAAGCTAATTATGACACAAGCAGCACCACCTCCAGGATGTTGAGGCTTAAGGTTTTTCAGGATATCACATTATCTTTGAGTCCAAGGGCCTGA 1506 0.4648 MLQDMWNAPPGFRPSKSAPSSPAKPLGMVPRTRSETFHVAHKVPIGDTPYVRAKNVQLVNKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALLIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGSDSHLKAYERAQQMLKDLESEMMNKGGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHHTTLPAAATTTNSAKIHDEFADENINSNIISTNHTALPPTKGSNNNKQLGAILGNSLNVAAPPFYASSKSSMLREPIENHLSETLKRTRSGNAAGSMRVVSDVRDANNNNNNKKLHVELGVPVPQNKTRRLSSEDAEKNKLTDLDLLPDDDEFEEAILAAILGPPNESDKANYDTSSTTSRMLRLKVFQDITLSLSPRA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01172 501 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 498 IPR044961 -
Gma16g01172 501 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 498 - -
Gma16g01172 501 Coils Coil 90 117 - -
Gma16g01172 501 SUPERFAMILY TPR-like 52 233 IPR011990 GO:0005515
Gma16g01172 501 SMART tpr_5 177 210 IPR019734 GO:0005515
Gma16g01172 501 Gene3D Tetratricopeptide repeat domain 55 238 IPR011990 GO:0005515
Gma16g01172 501 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Gma16g01172 501 Coils Coil 247 267 - -
Gma16g01172 501 MobiDBLite consensus disorder prediction 1 28 - -
Gma16g01172 501 Pfam Tetratricopeptide repeat 179 210 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01172 Gma-Chr16 28985353 28987743 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01172 - - gmx:100788369 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01172 16 28985353 28987743 Gma16g01172 16 28985353 28987743 ECH
Gma16g01172 16 28985353 28987743 Gma02g00420 02 4290948 4293235 GST