Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00420 ATGTTGCAGGAGATGTGGAATGCTCCTCCCGGTCTCAGACCCTCCAAGTCTGCACCTTGTTCTCCGGCAAAGCCTCTTGGGGTCGTTCCAAGAACGCGTTCTGAGTCCTTCCACGTGGCTCACAAGGTCCCAGTTGGTGACACTCCTTATGTCAGAGCCAAAAACGTTCAGTTGGTGGATAAGGATCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTTATGAAACAGCAAAATCGGGCCGAAGAAGCCATCGAAGCCATTAAATCGCTTCGAAGTAGATGTTCGGATCAAGCACAAGAATCTCTCGATAACATCCTCTTGGATCTCTACAAGAGATGTGGGAGACTTGATGATCAAATTGGTCTACTGAAGCACAAGTTGTACTTGATTCAACAAGGATTGGCTTTCAATGGAAAGCGAACAAAGACTGCAAGATCTCAAGGAAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGGGAAACTTGGGATGGGCACTGATGCAACAGAACAATTACATAGAAGCAGAAGACGCCTACCGCCGCGCGCTTTCGATAGCCCCAGATAACAACAAGATGTGCAATCTGGGCATTTGCTTGATGAAGCAAGGGAGAATTGGCGAGGCGAAGGAGACACTGTACCGGGTAAAGCCTGCAGTGATGGATGGCCCTAGAGGCTCAGATTCTCACCTGAAAGCCTATGAAAGGGCACAGCAAATGCTGAAAGACCTTGAGTCTGAGATGATGAACAAGGGAGTTGATAGGATTGAACAAAGCAGGCTCTTTGAGGCCTTTTTGGGTTCTTCATCAATTTGGCAACCACAGCCTTGCAAGGATCACCACCACACCACAACCTTGCTGGCAACAACAACAATAAATTCAGCCAAAATTCATGATGAGTTTGCTGATGAGAACATCAATTCCAACATAATGTTAACAAATCACACAGCACTGCCACCATCTAAGGGTAGCAACAACAACAACAGCAACAAACAAGTTGGTGCCATTTTGGGGAACTCACTCAATGTTGCAGCCCCTCCATTCTATGCATCAAAATCATCTATGTTAAGGGAACCAATTGAGAACCAGTTGTTCTCAGAGACCCTTAAGAGAACAAGGTCTGGAAATGCTGCAGGGTCCATGAGAGTGGTGAGTGATGTCAGGGATGCCAACATTAACAACAAGAAGTTGCATGTGGAATTAGGTGTGCCAGTGCCACAGAACAAATCAAGAAGGCTCTCCTCAGAAGATGCTGCTGAGAAGAACAAGTTAACAGACTTGTTGCCCAACGACGACGAATTTGAGGAGGCCATTCTTGCTGCAATTTTGGGAGCCCCAAATGAATCAGATAAAGCTTATTATGACACAGGTAGTACCACCTCCAGGATGTTGAGACTTAAGGTTTTTCAGGACATCACATTATCTCTGAGTCCAAGGGCCTGA 1503 0.4637 MLQEMWNAPPGLRPSKSAPCSPAKPLGVVPRTRSESFHVAHKVPVGDTPYVRAKNVQLVDKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIGLLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGSDSHLKAYERAQQMLKDLESEMMNKGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHHTTTLLATTTINSAKIHDEFADENINSNIMLTNHTALPPSKGSNNNNSNKQVGAILGNSLNVAAPPFYASKSSMLREPIENQLFSETLKRTRSGNAAGSMRVVSDVRDANINNKKLHVELGVPVPQNKSRRLSSEDAAEKNKLTDLLPNDDEFEEAILAAILGAPNESDKAYYDTGSTTSRMLRLKVFQDITLSLSPRA 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00420 500 MobiDBLite consensus disorder prediction 1 24 - -
Gma02g00420 500 Pfam Tetratricopeptide repeat 179 210 IPR001440 GO:0005515
Gma02g00420 500 Coils Coil 90 117 - -
Gma02g00420 500 Coils Coil 247 274 - -
Gma02g00420 500 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Gma02g00420 500 Gene3D Tetratricopeptide repeat domain 56 238 IPR011990 GO:0005515
Gma02g00420 500 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 497 - -
Gma02g00420 500 SMART tpr_5 177 210 IPR019734 GO:0005515
Gma02g00420 500 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 497 IPR044961 -
Gma02g00420 500 SUPERFAMILY TPR-like 58 285 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00420 Gma-Chr2 4290948 4293235 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00420 - - gmx:100803414 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00420 02 4290948 4293235 Gma02g00420 02 4290948 4293235 ECH
Gma16g01172 16 28985353 28987743 Gma02g00420 02 4290948 4293235 GST