Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01084 ATGTTTGTGAAGAAACTCGTGGAGAAAGCTTCCATAAAGAAGACTGGTGGAAATTCATCAGATGGATTAAAAGCTAGTGATGTAGATCCACGGTTGGTGTTTCATCATGGAGTGCCATCTGGTGGTGCCAAGTTCGCCTATGACACCATTCAGAGGATCCTGGCTCTTTCTACCAAGGATGGCCAGATTAAACTCTATGGAAAAGATAATGCTCAAGCCATGCTTGAATCTAGTGAGCCCCTGCCTAGCAAGTTTCTACAGTTCATCCAGAACCAAGGCGTCCTTATAAATGTCACTTCCAACAACCATATTGAGGCAAGTATATCTATGGACTTGCTCACATTTATTGTTTGGGACATAGACAAGAAACTGTTGTCTGATGTGTACATGGCTAAAGAAGAAATCACTTCCTTTGCAGTCATTCATCATAGCCTCTATATGTACATTGGACATTCTAATGGTAATATTTCAGTTTTGAAGCTTGACCAAGAGCCATCATGGCATTTGGTTCAGATGAAATACACCATACCTCTCTCAGCTTCCTATGGGAATTCTGAAGTGTCTGATGATACTGTTGTGACGCATATACTGCCTCAACCAGCAGCTGAAAGTAAGAGGGTTCTCATAATCTTTAGAAATGGTCAAATGATATTATGGAATATTCGGGAAAGTAGATCTATTTTCAAAACTGGTGAAAATATGTTGCAGCCACTGCATACTGAAACAAAAAAAGTGACTTCTGCATGTTGGGTGTGCCCTTTTGGAAGTAAAGCAATTGTAGGGTACAACAATGGAGAGCTCTTCATTTGGAGCATCCGTTCTCTAAATATAGGAAATGGTTCAGCATCTGAACATAGTTATCAAAATACTCCTTTGCTCAAACTTAACTTAGGATACAAGTCTGACAAAATTTCCATAGGATCAATAAAATGGGTTTATGCTGGAGGAAAGGCTAGTCGACTATATATTATGGGAGCCTCTGACTGTGCAACTTCAAACTTGTTGCAGGTAGTGTTGCTGAATGAGCATACAGAAGCTCGCACAATTAAGCTTGGACTTCATTTGTCTGAATGTTGTATTGACATGGAGATCATATCAACTTCAACTGAGCAAAGCAAGAATAAACAAGATTCTTTCATTTTGCTTGGGAAGTCAGGCCATCTATATCTGTATGACGATATTTTGATTGAAAGGTATCTGCTACAATGCCAATCTAAGTCCACACCATCACTTCCAAAGGAGGTAACTGTAAAGTTACCACTGGCAGAATCAAGCATCACAACAGCAAAATTCATCTCCAACAATCCCAATGTATTAACATTTGAAGATGAGTATTACAGACAGCTGATCACAAGCTATCCACTGTTTGTTCCTGTTGAAACAAATCAAAAAGATGAGATTAGCCTGAGTTCTGCCAAATTTACAGGATTTTCTAAAGTTCAAAACTTGTACATAACTGGACACAGCAATGGAGCCATAAACTTCTGGGATGCTTCATGCCCCATTTTCACTCCAATTTTACAATTGAAGCAACAGAGTGAAAATGACTGTTCATTAAGTGGTATACCCTTGACGGCATTATACTTCGATAGCAACTCCCCACTTCTTGTTTCTGGTGACCAGAGTGGAATGGTTTGTGTCTTTAGATTCAAAACTGAACCATATGCCACTAACAGCTTCATGTCTCTTACTGGAGGTACAAAGAAAGGGACTGATCATATAATCCAAAGTGTGAAACATGTAAAGATCAATGGTGCCATTCTGTCATTGAACATAGATCCCAGCTTGATGCATCTTGCTGTTGGTTCTGATCAGGGACATGTTTCAGTTTTTAACATAGATGGCCCAACTTTGTTATACCAGAAACATATTGCCAGTGAAATTTCTGCTGGTATCATCTCTCTGCAGTTCCTAACCAGCAGTTTACATGGTTTTGAAAAAAACATTTTAGCAGTTGGAACAAAAGATTCATCTGTTCTGGCACTAGATAAAGAAGCTGGAAACACACTGGGCACGGGAACTATTCATCCTAAGAAGCCCTCTAAAGCTCTATTTATGCAGGTTTTGGATGGACAAGGTGCACCGGTCAATGGATCGATTACAAAAGATGGATTAGAGTCGAGCGAAAGGAATCATATTGAGGATGCAACAACAAAGCAACAGTACATTTTGCTTTGTTCTGAGAAAGCTTTATATGTCTATTCATTGGTGCATGCGATTCAGGGAGTTAAAAAGGTGCTATACAAGAAAAGGTTTCATTCCTCTACGTGTTGCTGGGCATCAACATTTTACAGCCCTTCTGATGTTGGCCTTATACTCATTTTTACAAGTGGAAAAGTAGAATTAAGGTGGTCTTTGCCAGAGTTGTCCCTAATTGTGGAGACTTCAATTAGAGGTTATAATTATTCTCCTCCAAAATTGAAGTCATTTTCTGGCTGCCAGATATGTTGTTCATCCAAAGGAGATCTTGTTTTGGTGAACGGTAACCAAGAATTTTTTGTCGTCTCGCTGTTGGTGCAAAGAAATATTTTCAGGCTTTTGGACTCTATTAGCTGCATCTACAGGAAAAATATGATGCTGTCGCCAGAAGTGTTTGTTCCTGGCCCAGTCATCTATAAGGAAAAGAAAAAGGGTATATTCAGCTCTGTTATCAAAGATTTTGCTGGCAGTAAAGAAAAGCATGCTCCCATATTGGAAACCGAAGATACTACAGAAAGCATCCAGGAACTCTCAGCTATCTTCTCAAATGAAAATTTTCCATGTGATGCTGATAATAATGATAATCTGACTGTTGATGAAGATGAGCTTGAATTAAACATAGATGACATTGACCTAGACGATCATGAAGAAAAACACAAAGATCAAAGTATATTGGGAGCTCTTAATAAGAAGAAATTGACTGGAAAGTTTCAGGCTCTAAAAGGTAGATTGAAGGAGATGAAGGGCAACATCCAGAAAACATCAAGTAAGGAAGAGCAGCAAGATGAGCAAGCTGGTGCAGTCGATCAAATCAAGAAGAAATATGGATTTTCTTCTTCCAACGAAACAAGCTTTGCTAAATTGGCAGAAAGCAAGCTGCAGGAGAACATGAAAAAATTGCAGGGTATCAACCTTCGAACCACAGAAATGCAAGATAAAGCAAAATCATTTTCAACATTGGCAAACCAAGTGCTGCGGACTGCAGAACAGGAAAGACGAAATTAG 3204 0.3911 MFVKKLVEKASIKKTGGNSSDGLKASDVDPRLVFHHGVPSGGAKFAYDTIQRILALSTKDGQIKLYGKDNAQAMLESSEPLPSKFLQFIQNQGVLINVTSNNHIEASISMDLLTFIVWDIDKKLLSDVYMAKEEITSFAVIHHSLYMYIGHSNGNISVLKLDQEPSWHLVQMKYTIPLSASYGNSEVSDDTVVTHILPQPAAESKRVLIIFRNGQMILWNIRESRSIFKTGENMLQPLHTETKKVTSACWVCPFGSKAIVGYNNGELFIWSIRSLNIGNGSASEHSYQNTPLLKLNLGYKSDKISIGSIKWVYAGGKASRLYIMGASDCATSNLLQVVLLNEHTEARTIKLGLHLSECCIDMEIISTSTEQSKNKQDSFILLGKSGHLYLYDDILIERYLLQCQSKSTPSLPKEVTVKLPLAESSITTAKFISNNPNVLTFEDEYYRQLITSYPLFVPVETNQKDEISLSSAKFTGFSKVQNLYITGHSNGAINFWDASCPIFTPILQLKQQSENDCSLSGIPLTALYFDSNSPLLVSGDQSGMVCVFRFKTEPYATNSFMSLTGGTKKGTDHIIQSVKHVKINGAILSLNIDPSLMHLAVGSDQGHVSVFNIDGPTLLYQKHIASEISAGIISLQFLTSSLHGFEKNILAVGTKDSSVLALDKEAGNTLGTGTIHPKKPSKALFMQVLDGQGAPVNGSITKDGLESSERNHIEDATTKQQYILLCSEKALYVYSLVHAIQGVKKVLYKKRFHSSTCCWASTFYSPSDVGLILIFTSGKVELRWSLPELSLIVETSIRGYNYSPPKLKSFSGCQICCSSKGDLVLVNGNQEFFVVSLLVQRNIFRLLDSISCIYRKNMMLSPEVFVPGPVIYKEKKKGIFSSVIKDFAGSKEKHAPILETEDTTESIQELSAIFSNENFPCDADNNDNLTVDEDELELNIDDIDLDDHEEKHKDQSILGALNKKKLTGKFQALKGRLKEMKGNIQKTSSKEEQQDEQAGAVDQIKKKYGFSSSNETSFAKLAESKLQENMKKLQGINLRTTEMQDKAKSFSTLANQVLRTAEQERRN 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01084 1067 SUPERFAMILY WD40 repeat-like 47 671 IPR036322 GO:0005515
Gma16g01084 1067 SUPERFAMILY WD40 repeat-like 114 497 IPR036322 GO:0005515
Gma16g01084 1067 Gene3D - 455 689 IPR015943 GO:0005515
Gma16g01084 1067 CDD R-SNARE_STXBP5_6 1003 1059 - -
Gma16g01084 1067 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1066 - -
Gma16g01084 1067 Gene3D - 43 323 IPR015943 GO:0005515
Gma16g01084 1067 SMART WD40_4 462 497 IPR001680 GO:0005515
Gma16g01084 1067 SMART WD40_4 231 271 IPR001680 GO:0005515
Gma16g01084 1067 SMART WD40_4 512 549 IPR001680 GO:0005515
Gma16g01084 1067 SMART WD40_4 571 612 IPR001680 GO:0005515
Gma16g01084 1067 SMART WD40_4 121 160 IPR001680 GO:0005515
Gma16g01084 1067 Coils Coil 963 997 - -
Gma16g01084 1067 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1066 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01084 Gma-Chr16 27401970 27414066 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01084 - - gmx:100811900 2043.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01084 16 27401970 27414066 Gma16g01084 16 27401970 27414066 ECH
Gma11g00787 11 6554827 6565242 Gma16g01084 16 27401970 27414066 PCT
Gma16g01084 16 27401970 27414066 Gma11g00787 11 6554827 6565242 PCT