Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00729 ATGAGAGCAAAGGTAAGAGTTTTGAGAGAGAGAGGTTTTGAGTTGGAGGGAGGTGGTGGCACGAGGTGGTGGTGGAGGAGGCATCTAGCTGGTAGAGGCATTAGGGTTTTGAGAGAGAAAGATGAATGGAACGACGGCAATGAGAATGACAATGAAGGTAACAACGATGGTGATAATAGTGGTTATGACGGTGGTGTGATGATAATGGTGGTGAAGACAACAATGATAGAGTGTGGTGGTGGCGGAGAAGACGCTGAAGACATGTCTGGTCACTGGGGGATTCTTGTTTCAGATCCATGGCTTCAGAATCAGTTCACACAAGTGGAGCTTCGTAGCTTAAAGTCCCATTTCATGAGCATGAGGAGGGAAAGTGGGAGGCTTGTGATTGCGGATTTGGCTTCGAAGATGTCAAGGTTGAAGGTGGTGGGAGAGAATCTGAGTGAGGAAGAGAGAGCTTCTTGCGTGAAGGATGTGTATCAGAACACTGAAGAGGAGGTTGATTTTGAATTGTTTCTCAAGGTCTACTTGAAACTCCAAACATTTGTGAATTCTAGAACCGGAAGTAGTCCAAAGAACTCGTCAGCGTTCCTCAAGGCAGCTACAACCACATTGCTTCACACAATAAGTGAATCAGAGAAAGCATCATATGTAGCACATATAAATCACTATCTAGCACAAGATGAGTTCCTCAAGAAATATCTTCCTATTGACCCTTCAACCAATGAGCTCTTTGAAATTGCAAAAGATGGTGTTCTTCTTTGCAAGCTTATCAATGTAGCAGTTCCAGGGACCATCGACGAACGGGCGATCAATACAAAAAGAATACTCAATCCATGGGAAAGGAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACAGTGGTCAACATTGGCACTCAGGACTTCATTGAAGGAAGGCGTCATCTGGTGCTTGGGGTGATTTCTCAGATTATTAAGATACAATTATTGGCGGACCTCGAtttgaagaaaactccacagctgcttgagctgcttgatgacagtaagGATATGGAAGAGTTCATGAATCTACCCCCAGAAAAAATCTTGTTGAGGTGGATGAATTTCCATTTGAAAAAAGCAGGGTACAAGAAGATTGTCACTAATTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTTGCACCTGAACACACTAATCTCTCCACGTTGGCAGTTAAAAATCCCTTTGAAAGAGCAAAGTTAGTTCTTGAACATGCTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGGAATGGACTTTCAGCCCAGACAAAACAACAGATGTCTCTCCTTGAGACATTTCCAGATGACACCCTAGACTCTAGAGAAGAAAGAGCATTTCGCCTTTGGATGAATAGCTTTGGAAATTCAACATATATCAACAATGTCTTCGAGGATCTCCGAAATGGGTGGGTTCTTCTAGAGACTCTTGACAAGGTGTCGCCAGGGATTGTCAATTGGAAGATTGCTAATAAGCCTCCGATTAAGATGCCATTTAGAAAAGTGGAGAACTGCAACCAAGTTGTGAAAATAGGGAAACAGCTTAAATTTTCGCTGGTAAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAGCTTATTTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTTGAGATTTTACTCTCGTGGAAAGGAAATAAATGATGCTGATATTTTAGAGTGGGCCAACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAGGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGACACCCAGAGCTGTAAATTGGGGTCTTGTAACAAAGGGAGTAACCTACCAAGAGAAAAAGATGAACGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCTATATTCCTGCTTCCTGAAGACATCACTGAGGTAGTGAATCCAAAAATGATCCTTACACTAACAGCTAGTATAATGTCTTGGTGCCTAAAACACCCTCATGAAGAAAGGACAGTGGGAACTTCCGATAACGAGAGTGGGGGTCAATTGGAGACTACATCAAACTCAACACTAGATGACTCTGCCTCTGATTCATCACTAGATGAGAATGGGAACATATAA 2265 0.4115 MRAKVRVLRERGFELEGGGGTRWWWRRHLAGRGIRVLREKDEWNDGNENDNEGNNDGDNSGYDGGVMIMVVKTTMIECGGGGEDAEDMSGHWGILVSDPWLQNQFTQVELRSLKSHFMSMRRESGRLVIADLASKMSRLKVVGENLSEEERASCVKDVYQNTEEEVDFELFLKVYLKLQTFVNSRTGSSPKNSSAFLKAATTTLLHTISESEKASYVAHINHYLAQDEFLKKYLPIDPSTNELFEIAKDGVLLCKLINVAVPGTIDERAINTKRILNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLDLKKTPQLLELLDDSKDMEEFMNLPPEKILLRWMNFHLKKAGYKKIVTNFSSDVKDAEAYAHLLNVLAPEHTNLSTLAVKNPFERAKLVLEHADKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLSAQTKQQMSLLETFPDDTLDSREERAFRLWMNSFGNSTYINNVFEDLRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFRKVENCNQVVKIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFYSRGKEINDADILEWANSKVSSSRSQSRMDSFKDKSLSDGIFFLELLSSVTPRAVNWGLVTKGVTYQEKKMNATYIISIARKLGCSIFLLPEDITEVVNPKMILTLTASIMSWCLKHPHEERTVGTSDNESGGQLETTSNSTLDDSASDSSLDENGNI 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00729 754 CDD CH 482 585 IPR001715 GO:0005515
Gma16g00729 754 ProSiteProfiles Calponin homology (CH) domain profile. 210 327 IPR001715 GO:0005515
Gma16g00729 754 CDD CH 356 456 IPR001715 GO:0005515
Gma16g00729 754 SMART ch_5 212 325 IPR001715 GO:0005515
Gma16g00729 754 SMART ch_5 483 585 IPR001715 GO:0005515
Gma16g00729 754 SMART ch_5 604 709 IPR001715 GO:0005515
Gma16g00729 754 SMART ch_5 357 456 IPR001715 GO:0005515
Gma16g00729 754 MobiDBLite consensus disorder prediction 717 754 - -
Gma16g00729 754 Gene3D - 596 708 IPR036872 -
Gma16g00729 754 MobiDBLite consensus disorder prediction 723 754 - -
Gma16g00729 754 ProSiteProfiles Calponin homology (CH) domain profile. 602 711 IPR001715 GO:0005515
Gma16g00729 754 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 88 753 - -
Gma16g00729 754 CDD CH 211 325 IPR001715 GO:0005515
Gma16g00729 754 Gene3D - 206 332 IPR036872 -
Gma16g00729 754 Gene3D - 333 461 IPR036872 -
Gma16g00729 754 Pfam Calponin homology (CH) domain 238 324 IPR001715 GO:0005515
Gma16g00729 754 Pfam Calponin homology (CH) domain 356 457 IPR001715 GO:0005515
Gma16g00729 754 Pfam Calponin homology (CH) domain 605 710 IPR001715 GO:0005515
Gma16g00729 754 Pfam Calponin homology (CH) domain 483 586 IPR001715 GO:0005515
Gma16g00729 754 MobiDBLite consensus disorder prediction 43 62 - -
Gma16g00729 754 Gene3D - 477 594 IPR036872 -
Gma16g00729 754 ProSiteProfiles Calponin homology (CH) domain profile. 355 458 IPR001715 GO:0005515
Gma16g00729 754 ProSiteProfiles Calponin homology (CH) domain profile. 481 587 IPR001715 GO:0005515
Gma16g00729 754 PANTHER FIMBRIN/PLASTIN 88 753 IPR039959 GO:0051015|GO:0051017
Gma16g00729 754 SUPERFAMILY Calponin-homology domain, CH-domain 208 707 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00729 Gma-Chr16 9453222 9464431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00729 88 713 EF-hand Containing Proteins AT5G55400 64.809 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00729 - K17275 gmx:100793464 1292.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00828 03 29977689 29985690 Gma16g00729 16 9453222 9464431 GST
Gma18g01383 18 28829575 28830392 Gma16g00729 16 9453222 9464431 PCT
Gma16g00729 16 9453222 9464431 Gma18g01383 18 28829575 28830392 PCT