Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00420 ATGGGGATGAAGAAGGCGACGATGGATCACGTGCTGCTAGCGTCGCAGGAGACGAAGGAAACACGTGAGGTGCGGATTCGGAGCCTCTTCGATTTCTTCGACAGAGAGAATCTCGGGTTCTTGGACTACTCCCACATTGAAGCGGGTCTCTCGGCGCTTCAGATTCCGTCAGAGTATAAGTACGCCAAAGATTTGTTGAACGCTTGCGATGCCAACAAGGATGGGAGAGTGGATTTCCAGGAGTTCAGGAAGTATATGGACGACAAGGAACTTGAGCTTTATCGCATTTTTCAGGCCATTGATGTTGCGCATAATGGGTGCATTTTGCCCGAGGAGCTTTGGGAGGCGCTTGTGAGAGCAGGAATTAAGATTGATGATGAAGAACTCGCCCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACCATTGAGAACATTTACCATTATTTGGAGCGGATATGTGTGGTTGATATAGGGGAACAGACTGTTATTCCAGCAGGTATTGGTAAGCACATTCATGCAAGCAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCAGCGTCACGCACAGCAACTGCACCCCTTGACCGGCTAAAGGTGGTATTGCAAATCCAAACAACACAATCTCATATAATGCCTGCAATTAAAGATATTTGGAAAAAGGGTGGTTTGTTAGGATTTTTTCGAGGCAATGGCTTAAATGTTCTTAAGGTGGCCCCTGAGAGTGCCATTAGATTTTATAGCTATGAGATGCTGAAGAGCTTCATTACGAGAGCCAAAGGGGATGAGGCAAAGGCTGCTAATATTGGAGCTATGGGGCGGCTGCTAGCTGGTGGTATTGCTGGCGCTGTAGCTCAAACTGCAATATATCCCATGGATCTTGTTAAAACAAGACTACAAACCCATGCTTGTAAAAGTGGAAGAATTCCTAGTCTTGGAACCCTTTCAAAAGATATATGGGTTCAGGAAGGACCCCGGGCATTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATTATCCCTTATGCCGGCATAGATCTTGCTGCATATGAAACCTTGAAGGATATGTCCAAGCAGTATATTCTTCATGATGGAGAACCTGGTCCTCTAGTACAATTAGGATGTGGAACTGTATCTGGAACTCTTGGAGCAACATGTGTTTACCCGCTGCAGGTGGTTAGAACAAGAATGCAGGCTCAACGCTCATATAAGGGAATGGCTGATGTATTCAGGAAAACCCTTGAACATGAAGGTTTGAGGGGGTTCTACAAAGGAATATTTCCTAACTTACTCAAAGTTGTACCGTCAGCAAGCATCACCTACATGGTTTATGAGTCTATGAAAAAAAGTTTGGATTTGGAGTGA 1422 0.4487 MGMKKATMDHVLLASQETKETREVRIRSLFDFFDRENLGFLDYSHIEAGLSALQIPSEYKYAKDLLNACDANKDGRVDFQEFRKYMDDKELELYRIFQAIDVAHNGCILPEELWEALVRAGIKIDDEELARFVERVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICVVDIGEQTVIPAGIGKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQIQTTQSHIMPAIKDIWKKGGLLGFFRGNGLNVLKVAPESAIRFYSYEMLKSFITRAKGDEAKAANIGAMGRLLAGGIAGAVAQTAIYPMDLVKTRLQTHACKSGRIPSLGTLSKDIWVQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSKQYILHDGEPGPLVQLGCGTVSGTLGATCVYPLQVVRTRMQAQRSYKGMADVFRKTLEHEGLRGFYKGIFPNLLKVVPSASITYMVYESMKKSLDLE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00420 473 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Gma16g00420 473 Gene3D - 104 179 - -
Gma16g00420 473 SMART efh_1 25 53 IPR002048 GO:0005509
Gma16g00420 473 SMART efh_1 128 156 IPR002048 GO:0005509
Gma16g00420 473 SMART efh_1 92 120 IPR002048 GO:0005509
Gma16g00420 473 SMART efh_1 61 89 IPR002048 GO:0005509
Gma16g00420 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 386 469 IPR018108 -
Gma16g00420 473 Gene3D - 1 92 - -
Gma16g00420 473 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Gma16g00420 473 PANTHER SOLUTE CARRIER FAMILY 25 41 470 - -
Gma16g00420 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 288 375 IPR018108 -
Gma16g00420 473 Pfam Mitochondrial carrier protein 190 277 IPR018108 -
Gma16g00420 473 Pfam Mitochondrial carrier protein 288 376 IPR018108 -
Gma16g00420 473 Pfam Mitochondrial carrier protein 387 470 IPR018108 -
Gma16g00420 473 Pfam EF-hand domain pair 92 151 IPR002048 GO:0005509
Gma16g00420 473 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Gma16g00420 473 ProSiteProfiles EF-hand calcium-binding domain profile. 21 56 IPR002048 GO:0005509
Gma16g00420 473 PRINTS Mitochondrial carrier protein signature 196 209 IPR002067 GO:0055085
Gma16g00420 473 PRINTS Mitochondrial carrier protein signature 209 223 IPR002067 GO:0055085
Gma16g00420 473 PRINTS Mitochondrial carrier protein signature 249 269 IPR002067 GO:0055085
Gma16g00420 473 PRINTS Mitochondrial carrier protein signature 303 321 IPR002067 GO:0055085
Gma16g00420 473 PRINTS Mitochondrial carrier protein signature 348 366 IPR002067 GO:0055085
Gma16g00420 473 PRINTS Mitochondrial carrier protein signature 395 417 IPR002067 GO:0055085
Gma16g00420 473 SUPERFAMILY EF-hand 20 187 IPR011992 -
Gma16g00420 473 ProSiteProfiles EF-hand calcium-binding domain profile. 93 123 IPR002048 GO:0005509
Gma16g00420 473 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 41 470 - -
Gma16g00420 473 Pfam EF hand 63 84 IPR002048 GO:0005509
Gma16g00420 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 191 274 IPR018108 -
Gma16g00420 473 Gene3D Mitochondrial carrier domain 187 471 IPR023395 -
Gma16g00420 473 SUPERFAMILY Mitochondrial carrier 189 464 IPR023395 -
Gma16g00420 473 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00420 Gma-Chr16 4489527 4493325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00420 7 473 EF-hand Containing Proteins AT5G51050 72.650 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00420 K14684 - gmx:100792955 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00420 16 4489527 4493325 Gma02g00600 02 5988169 5991452 PCT
Gma02g00600 02 5988169 5991452 Gma16g00420 16 4489527 4493325 PCT