Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00600 ATGGGGTCGAACCGGAGAAAGAGCGAGGACCACCCGGCAACGACGCTGGATCACGCGCTGCTAGCGTCGGGAGAAAGCGCGGAAGAGAGGGAAACGCGGATTCGCGCTCTCTTCGCCTTCTTCGACGCGGAGAATTGCGGATTCTTGGACTGCTCCGCGATCGAGAGCGGACTCTCGGCGCTGCGAATGCCCTCGGACTCGGAGTGCTGCAACTACGCGCAGGACCTGTTCGGCGCGTGCGATGCAAACAAAGACGGGCGCGTGGACTACGAGGAGTTCAAGAGGTACATGGATGATAAGGAGCTCGAGTTGTATCGGATTTTTCAGGCGATTGATGTTGAGCACAGTGGGTGTATTTCGCCCGAGGAGCTCTCGCACGCGCTTGTTAGAGCAGGGATTCAGATTGATGATGAGGAACTTGCCCGATTTGTTGAGCGTGTAGACAAGGATCATAATGGGGTTATAACATTTGGAGAATGGAGGGATTTTCTGCTGCTGTATCCTCATGAGGCAACCATTGAAAATATTTACCATTACTTGGAGCGGGTATGCTTGATTGATATTGGGGAACAAACTGTTATTCCTGCAGGCATTAGCAAGCACATCCATGCAAGTAGCTATCTGATTGCTGGAGGAGTAGCAGGTGCTGCATCGCGTACAACAACCGCACCCCTTGATCGATTAAAGGTTGTGTTGCAAGTCCAAACAACACGAGCTCATGTAATGCCTGCAATAAAAGATATATGGAAAGAAGGTGGTTGCTTAGGTTTTTTTCGAGGCAATGGCTTAAATGTTCTTAAGGTGGCCCCAGAGAGTGCTATTAGATTTTACACCTATGAGATGCTAAAGGCATTCATAGGGAATGCTAAAGGAGAAGGAGCAAAGGCTGATGTTGGTACTATGGGGCGGCTTCTAGCGGGTGGTATGGCTGGTGCTGTAGCTCAGACTGCAATATATCCTCTGGATCTTGTTAAAACTAGAATACAAACTTATGCTTGTGAAGGTGGAAGACTTCCCAGTCTTGGAACTCTCTCAAAAGATATATGGGTTAAGGAAGGACCCCGCGCATTTTATAAGGGCTTGATTCCTTCTATTCTGGGGATTGTCCCATATGCTGGCATAGACCTAGCTGCATATGAAACGTTGAAAGACATGTCCAAGAAATATATTCTTCTTGATGAAGAACCTGGTCCTCTTGTACAATTAGGATGTGGGACGGTATCAGGTGCCCTTGGAGCAACCTGTGTTTACCCATTGCAGGTTGTTAGAACAAGAATGCAGGCTCAACGTGCTTATATGGGGATGGCTGATGTATTCAGGATAACTTTTAAACATGAAGGGTTTAGGGGATTCTACAAAGGACTATTTCCTAACCTGCTAAAAGTTGTTCCATCTGCTAGTATCACTTATTTGGTCTATGAGAATATGAAGAAGGGCTTGGATTTGGATTGA 1452 0.4731 MGSNRRKSEDHPATTLDHALLASGESAEERETRIRALFAFFDAENCGFLDCSAIESGLSALRMPSDSECCNYAQDLFGACDANKDGRVDYEEFKRYMDDKELELYRIFQAIDVEHSGCISPEELSHALVRAGIQIDDEELARFVERVDKDHNGVITFGEWRDFLLLYPHEATIENIYHYLERVCLIDIGEQTVIPAGISKHIHASSYLIAGGVAGAASRTTTAPLDRLKVVLQVQTTRAHVMPAIKDIWKEGGCLGFFRGNGLNVLKVAPESAIRFYTYEMLKAFIGNAKGEGAKADVGTMGRLLAGGMAGAVAQTAIYPLDLVKTRIQTYACEGGRLPSLGTLSKDIWVKEGPRAFYKGLIPSILGIVPYAGIDLAAYETLKDMSKKYILLDEEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRAYMGMADVFRITFKHEGFRGFYKGLFPNLLKVVPSASITYLVYENMKKGLDLD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00600 483 SUPERFAMILY EF-hand 29 204 IPR011992 -
Gma02g00600 483 ProSitePatterns EF-hand calcium-binding domain. 148 160 IPR018247 -
Gma02g00600 483 SMART efh_1 33 61 IPR002048 GO:0005509
Gma02g00600 483 SMART efh_1 139 167 IPR002048 GO:0005509
Gma02g00600 483 SMART efh_1 72 100 IPR002048 GO:0005509
Gma02g00600 483 SMART efh_1 103 131 IPR002048 GO:0005509
Gma02g00600 483 Gene3D - 115 190 - -
Gma02g00600 483 Pfam EF hand 74 95 IPR002048 GO:0005509
Gma02g00600 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 285 IPR018108 -
Gma02g00600 483 Gene3D - 4 103 - -
Gma02g00600 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 396 479 IPR018108 -
Gma02g00600 483 ProSiteProfiles EF-hand calcium-binding domain profile. 99 134 IPR002048 GO:0005509
Gma02g00600 483 PANTHER SOLUTE CARRIER FAMILY 25 48 481 - -
Gma02g00600 483 SUPERFAMILY Mitochondrial carrier 201 475 IPR023395 -
Gma02g00600 483 Gene3D Mitochondrial carrier domain 198 480 IPR023395 -
Gma02g00600 483 ProSiteProfiles EF-hand calcium-binding domain profile. 135 170 IPR002048 GO:0005509
Gma02g00600 483 Pfam Mitochondrial carrier protein 397 480 IPR018108 -
Gma02g00600 483 Pfam Mitochondrial carrier protein 201 288 IPR018108 -
Gma02g00600 483 Pfam Mitochondrial carrier protein 298 388 IPR018108 -
Gma02g00600 483 ProSiteProfiles Solute carrier (Solcar) repeat profile. 298 385 IPR018108 -
Gma02g00600 483 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 48 481 - -
Gma02g00600 483 PRINTS Mitochondrial carrier protein signature 207 220 IPR002067 GO:0055085
Gma02g00600 483 PRINTS Mitochondrial carrier protein signature 220 234 IPR002067 GO:0055085
Gma02g00600 483 PRINTS Mitochondrial carrier protein signature 260 280 IPR002067 GO:0055085
Gma02g00600 483 PRINTS Mitochondrial carrier protein signature 313 331 IPR002067 GO:0055085
Gma02g00600 483 PRINTS Mitochondrial carrier protein signature 358 376 IPR002067 GO:0055085
Gma02g00600 483 PRINTS Mitochondrial carrier protein signature 405 427 IPR002067 GO:0055085
Gma02g00600 483 CDD EFh 103 164 IPR002048 GO:0005509
Gma02g00600 483 Pfam EF-hand domain pair 103 159 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00600 Gma-Chr2 5988169 5991452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00600 14 483 EF-hand Containing Proteins AT5G51050 72.399 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00600 K14684 - gmx:100777729 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00420 16 4489527 4493325 Gma02g00600 02 5988169 5991452 PCT
Gma02g00600 02 5988169 5991452 Gma16g00420 16 4489527 4493325 PCT