Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00348 ATGAACAGGCTGATAAAAGTTGATCCAACAAACACGGTCACAATAAGGATGGAGCCAGGCCAAAAATGTCATGGCCAAATAACCCTACGCAACGTCATGTACACCATGCCCGTAGCATTCAGGCTTCAACCGTTGATCAAAACGCGTTACACGGTGAAGCCACAATCGGGAATCATATCTCCGTTAGCCACGGTAACAATAGAAATACTCTACAATCTTCCACAAGGATCCACTCTACCACACTCATTTCCACACTCCGAAGATTCCTTCCTCATCCACAGCGTGGTGGTTCCCGGCGCCACCGTGAAAGAACCTTCCTCCATGTTCGAATCCGTTCCCAGCGACTGGTTCACCACGAAGAAGAAACAAGTCTTCATCGACAGCGGCATCAAGATCATCTTCGTCGGCTCGTTGATCCTGGCACAGTTAGTCCACGACGGGTCCATCGATGAAATCAGACAAGTGCTGGAACACAGTGAACACACGTGGAAGAAAGCCGTTGACTCCGTTGATCAAAACGGAGACACGCTCCTCCACGTGGCGATTTCTAAAAGAAGACCCGACCTCGTGCAGCTCCTCCTCGAATTCAACGCCGACGTGGAATCAAAAAACCGTTCAGGCGAGACCGCGTTAGAATCAGCGTGTTCCTCCGGAGAGGAACTAATCGTGGAGCTTCTCTTAGCTCACAAGGCAAACACAGAGAGAACGGAATCTTCTTCATTGGGAGCGATACATCTATCGGCGAGAGAAGGACACGTGGAGGTATTAAGATTACTGTTGATGAAAGGAGCCAGAGTTGACTCGTTGACCAAAGACGGTTACACCGCGTTGCACCTTGCGGTTAGAGAAGGTTTGAGAGATTGCGTGAGGCTGTTACTGGCGAACGAGGGGAGGACAGACATTAGAGATTCAAGAGACGGTGACACGTGTCTGCACGTGGCGGCGGGTGTGGGGGACGAGAGCATGGTGAAGCTTTTGTTGAATAAGGGAGCTAATAAGGAAGTGAGGAATTTTAAGGGAGAGACTGCGTATGATGTTGCTGTGGAGAAAGGAAAGGCGAGCGTGTTCGACGCGCTGAGGCTGGGGGATGGGTTGTGTGTGGCGGCGAGGAAAGGGGAGGTGAGGAGTATCAAGAGGCTGATTGAGGGAGGAGCGGCGGTGGACGGGAGGGACCAGCACGGGTGGACGGCGTTGCACAGGGCGTGTTTTAAGGGGCGCGTGGAGGCGGTGAGGGCGCTGTTGTTGGAGAGAGGGGTTGAGGTGGACGCGAGGGATGAGGAGGGGTACACGGCGCTGCATTGCGCGGTGGAGGCGGGGCATGGGGACGTGGCGGAGGTGCTGGTGAAGAGGGGCGTGGATGTGGAGGCGAGGACGAGTAAGGGTGTGAGTGCGTTGCAGATCGCGGAGGCGTTGGGGTATGGTGGGATTGCCAGGGTGCTTGTTGGTGGTGCTGCGGGACACGTGGCGGAAGGGATGAAGAAGGTTGCAAGGAGGAGGGAGAGGGAGATTCGGGCTAGCTTTGACCGGTCAATGCCTTTGGCTGTTCTCTAG 1551 0.5442 MNRLIKVDPTNTVTIRMEPGQKCHGQITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEILYNLPQGSTLPHSFPHSEDSFLIHSVVVPGATVKEPSSMFESVPSDWFTTKKKQVFIDSGIKIIFVGSLILAQLVHDGSIDEIRQVLEHSEHTWKKAVDSVDQNGDTLLHVAISKRRPDLVQLLLEFNADVESKNRSGETALESACSSGEELIVELLLAHKANTERTESSSLGAIHLSAREGHVEVLRLLLMKGARVDSLTKDGYTALHLAVREGLRDCVRLLLANEGRTDIRDSRDGDTCLHVAAGVGDESMVKLLLNKGANKEVRNFKGETAYDVAVEKGKASVFDALRLGDGLCVAARKGEVRSIKRLIEGGAAVDGRDQHGWTALHRACFKGRVEAVRALLLERGVEVDARDEEGYTALHCAVEAGHGDVAEVLVKRGVDVEARTSKGVSALQIAEALGYGGIARVLVGGAAGHVAEGMKKVARRREREIRASFDRSMPLAVL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00348 516 ProSiteProfiles Ankyrin repeat profile. 427 459 IPR002110 GO:0005515
Gma16g00348 516 Gene3D Immunoglobulins 1 125 IPR013783 -
Gma16g00348 516 Pfam Ankyrin repeats (3 copies) 365 457 IPR002110 GO:0005515
Gma16g00348 516 Pfam Ankyrin repeats (3 copies) 164 234 IPR002110 GO:0005515
Gma16g00348 516 Pfam Ankyrin repeats (3 copies) 244 337 IPR002110 GO:0005515
Gma16g00348 516 ProSiteProfiles Ankyrin repeat profile. 272 304 IPR002110 GO:0005515
Gma16g00348 516 SMART ANK_2a 239 268 IPR002110 GO:0005515
Gma16g00348 516 SMART ANK_2a 393 423 IPR002110 GO:0005515
Gma16g00348 516 SMART ANK_2a 306 335 IPR002110 GO:0005515
Gma16g00348 516 SMART ANK_2a 173 202 IPR002110 GO:0005515
Gma16g00348 516 SMART ANK_2a 206 235 IPR002110 GO:0005515
Gma16g00348 516 SMART ANK_2a 272 303 IPR002110 GO:0005515
Gma16g00348 516 SMART ANK_2a 427 456 IPR002110 GO:0005515
Gma16g00348 516 ProSiteProfiles Ankyrin repeat profile. 393 426 IPR002110 GO:0005515
Gma16g00348 516 ProSiteProfiles Ankyrin repeat region circular profile. 393 426 - -
Gma16g00348 516 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 499 - -
Gma16g00348 516 SUPERFAMILY Ankyrin repeat 167 482 IPR036770 -
Gma16g00348 516 ProSiteProfiles Ankyrin repeat region circular profile. 427 457 - -
Gma16g00348 516 ProSiteProfiles Ankyrin repeat profile. 206 238 IPR002110 GO:0005515
Gma16g00348 516 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Gma16g00348 516 ProSiteProfiles Ankyrin repeat profile. 306 338 IPR002110 GO:0005515
Gma16g00348 516 ProSiteProfiles Ankyrin repeat profile. 173 205 IPR002110 GO:0005515
Gma16g00348 516 Gene3D - 238 303 IPR036770 -
Gma16g00348 516 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 499 - -
Gma16g00348 516 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Gma16g00348 516 Gene3D - 304 363 IPR036770 -
Gma16g00348 516 Gene3D - 415 482 IPR036770 -
Gma16g00348 516 ProSiteProfiles Ankyrin repeat region circular profile. 272 303 - -
Gma16g00348 516 SUPERFAMILY PapD-like 2 149 IPR008962 -
Gma16g00348 516 ProSiteProfiles Ankyrin repeat region circular profile. 306 337 - -
Gma16g00348 516 Gene3D - 364 414 IPR036770 -
Gma16g00348 516 Gene3D - 134 237 IPR036770 -
Gma16g00348 516 ProSiteProfiles Ankyrin repeat region circular profile. 239 267 - -
Gma16g00348 516 ProSiteProfiles Ankyrin repeat region circular profile. 173 205 - -
Gma16g00348 516 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00348 Gma-Chr16 3626078 3627789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00348 305 468 Miscellaneous Gene Families AT2G31820 31.720 2.05e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00348 - - gmx:100778044 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01113 19 39347740 39349323 Gma16g00348 16 3626078 3627789 GST