Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00290 ATGGTGAGCCAACAGCTTCTGTCCAAGATTGCCACCAATGACAAACATGGAGAGAATTCTCCATATTTTGATGGGTGGAAGGCATATGATAGAAACCCTTTTCACCCTACAAAAAATCCTCAGGGTGTTATTCAGATGGGTCTTGCTGAAAACCAGCTTTGCTTTGATTTGATTGAAGAGTGGATAAGGAATAACCCCAGGGCTTCCATTTGCACTCCTGAAGGAGTGCATCAGTTCAGAAATATTGCTAATTTTCAGGACTATCATGGGTTGCGAGAGTTCACAAATGAAATggcaaattttatgtcaaaagtgagaggaggtagggtcaaatttgatccagaccgtatattgatgagtggaggggcaacaggggcaaatgaactaatcatgttctgcttggctgatcctggagatgcttttatgattcccaccccattttatcccggATTCGTCCGTGACTTGTGTTGGAGAACTGGGGTGCAAATAATTCCTGTCCACTGTGATAGCTCCAACAACTTCAAGATAACAAGAGAAGCACTTGAAGTAGCCTACAAAAAAGCCAAAGAGGACAACATCAACGTGAAGGGGTTGATCATAACAAACCCGTCTAACCCTTTAGGCACAACATTAGACAAGGACACGTTGAAGAGCCTAGTGAATTTCATCAACGAAAAAAACATTCACTTAGTTTGTGATGAAATCTATGCTGCCACTGTTTTCAGCTCCCCTAGTTATGTAAGCGTTGCCGAAGTGATCCAAGAAATGGAACATTGCAAACGTGACCTAATTCATGTGATTTATAGTTTGTCTAAGGACATGGGGTTTCCTGGCTTCAGGGTTGGCATAGTTTACTCATTCAACGATGAAGTGGTGAATTGTGGAAGGAAAATGTCGAGTTTCGGATTAGTCTCTACGCAAACTCAACACATGTTGGCTTCGATGTTTTCGGATGAAAAGTTTGTAACTAGGTTTCTTTCGGAGAATTCTAGGAGGTTGGAACAAAGGCACGAAAAGTTCATGAAGGGGCTTGAAGAGGTTAACATCACTCGATTCCCAAGCAATGCGGGACTTTTTTGTTGGATGAACTTGAAGAGTTTGTTGGAGGAGCCATCTTTTGAAGCTGAGTTGAAGCTATGGCGTGTGATTATTCATGAGGTGAAGCTCAATGTTTCACCGGGATCTTCCTTCAACTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCCAACATGGATGATGAAACAGTGGATGTTGCACTCAACAGAATTCGTGCATTCGTAGGTAAAGAAACTAAGAAATCGGTGGGATTCAAACGATGGCAACCGAATCTTAGGCTCAGTTTCTCTTCAAGGATATTTGATGAGAGTGTCATGTCTCCTCATTCGCCTATTCCTACTTCACCACTTGTTGGAGCCAATTGA 1425 0.3761 MVSQQLLSKIATNDKHGENSPYFDGWKAYDRNPFHPTKNPQGVIQMGLAENQLCFDLIEEWIRNNPRASICTPEGVHQFRNIANFQDYHGLREFTNEMANFMSKVRGGRVKFDPDRILMSGGATGANELIMFCLADPGDAFMIPTPFYPGFVRDLCWRTGVQIIPVHCDSSNNFKITREALEVAYKKAKEDNINVKGLIITNPSNPLGTTLDKDTLKSLVNFINEKNIHLVCDEIYAATVFSSPSYVSVAEVIQEMEHCKRDLIHVIYSLSKDMGFPGFRVGIVYSFNDEVVNCGRKMSSFGLVSTQTQHMLASMFSDEKFVTRFLSENSRRLEQRHEKFMKGLEEVNITRFPSNAGLFCWMNLKSLLEEPSFEAELKLWRVIIHEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVDVALNRIRAFVGKETKKSVGFKRWQPNLRLSFSSRIFDESVMSPHSPIPTSPLVGAN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00290 474 SUPERFAMILY PLP-dependent transferases 12 429 IPR015424 -
Gma16g00290 474 Gene3D - 66 318 IPR015421 GO:0003824
Gma16g00290 474 Gene3D Aspartate Aminotransferase, domain 1 32 423 IPR015422 GO:0003824
Gma16g00290 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 46 72 - -
Gma16g00290 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 79 95 - -
Gma16g00290 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 116 136 - -
Gma16g00290 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 159 - -
Gma16g00290 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 192 216 - -
Gma16g00290 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 228 251 - -
Gma16g00290 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 263 287 - -
Gma16g00290 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 295 318 - -
Gma16g00290 474 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1 445 - -
Gma16g00290 474 CDD AAT_like 84 426 - -
Gma16g00290 474 Pfam Aminotransferase class I and II 44 424 IPR004839 GO:0009058|GO:0030170
Gma16g00290 474 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 445 - -
Gma16g00290 474 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 269 282 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00290 Gma-Chr16 3071897 3075719 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00290 K20772 - gmx:100813347 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00290 16 3071897 3075719 Gma16g00290 16 3071897 3075719 ECH
Gma07g00601 07 6174039 6177257 Gma16g00290 16 3071897 3075719 GST
Gma18g02195 18 55727116 55730416 Gma16g00290 16 3071897 3075719 PCT
Gma09g02335 09 48719052 48722547 Gma16g00290 16 3071897 3075719 PCT
Gma16g00290 16 3071897 3075719 Gma18g02195 18 55727116 55730416 PCT
Gma16g00290 16 3071897 3075719 Gma09g02335 09 48719052 48722547 PCT