Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00243 ATGGCTTCGGAGAATGTGAAGACCGGGGATTCGGCCGTGACGACGATCGTCAATCTCGCCGAGGAGGCCAAGCTCGCCAGGGAAGGCGTCGTCAAGGCTCCCAGCTACGCCCTCGCCAGCATCTGCAAGTCGCTCGTCGCCGGTGGCGTCGCCGGAGGAGTGTCACGTACTGCAGTTGCTCCTCTGGAACGATTGAAAATTTTGCTGCAGGTCCAGAATCCTCATAACATTAAATACAACGGAACAGTACAAGGCCTAAAATATATATGGAGAACTGAAGGATTCCGTGGACTTTTCAAAGGGAATGGTACTAATTGTGCTAGAATTGTCCCTAATTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGCATCTGTATAAGCAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTCTTTTACGCCTTGGAGCTGGAGCTTGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGATATGGTTCGAGGCAGGATTACTGTGCAGACTGAGGCATCCCCATATCAGTACAGAGGAATGTTTCATGCTTTGTCTACTGTGCTCAGGGAAGAAGGTGCTCGTGCTTTATATAAGGGTTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTCTATGAGTCTCTGAAAGATTATTTAATTAAATCCAACCCATTTGATCTAGTTGAAAATTCTGAGTTGAGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTACCCTCTTGATGTTATTCGTCGAAGAATGCAGATGGTTGGTTGGAACCACGCTGCTTCTGTTCTAACTGGTGATGGAAGAGGCAAAGTCCCACTTGAATACACTGGAATGATTGATGCATTCAGAAAAACTGTTCAGCACGAGGGATTTGGTGCATTATACAAGGGTCTGGTGCCCAACTCTGTAAAGGTGGTCCCATCGATAGCAATTGCATTCGTAACATATGAGGTTGTGAAAGACGTTTTAGGAGTTGAGATCAGAATATCCGACTAA 1068 0.4607 MASENVKTGDSAVTTIVNLAEEAKLAREGVVKAPSYALASICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTVQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYKQQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGARALYKGWLPSVIGVIPYVGLNFAVYESLKDYLIKSNPFDLVENSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRGKVPLEYTGMIDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDVLGVEIRISD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00243 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Gma16g00243 355 PANTHER BNAA09G39370D PROTEIN 1 350 - -
Gma16g00243 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Gma16g00243 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Gma16g00243 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Gma16g00243 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Gma16g00243 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Gma16g00243 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Gma16g00243 355 Gene3D Mitochondrial carrier domain 37 349 IPR023395 -
Gma16g00243 355 Pfam Mitochondrial carrier protein 40 126 IPR018108 -
Gma16g00243 355 Pfam Mitochondrial carrier protein 244 347 IPR018108 -
Gma16g00243 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Gma16g00243 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
Gma16g00243 355 PANTHER SOLUTE CARRIER FAMILY 25 1 350 - -
Gma16g00243 355 SUPERFAMILY Mitochondrial carrier 40 342 IPR023395 -
Gma16g00243 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00243 Gma-Chr16 2641472 2645653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00243 45 350 EF-hand Containing Proteins AT5G51050 37.785 1.45e-64 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00243 K14684 - gmx:100809410 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00243 16 2641472 2645653 Gma16g00243 16 2641472 2645653 ECH
Gma07g00542 07 5250435 5256060 Gma16g00243 16 2641472 2645653 GST
Gma19g02391 19 52473690 52478985 Gma16g00243 16 2641472 2645653 PCT
Gma03g02352 03 48690301 48694718 Gma16g00243 16 2641472 2645653 PCT
Gma16g00243 16 2641472 2645653 Gma19g02391 19 52473690 52478985 PCT
Gma16g00243 16 2641472 2645653 Gma03g02352 03 48690301 48694718 PCT