Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02352 ATGGCTTCGGAGACGAAGGTCGTGAATCTGGCTGAGGAAGCCAAGCTCGCCAGAGAAGGTGTAACGACTCCCTCATATGCTTTTACCACCATCTGCAAGTCCCTCGTCGCTGGTGGAGTCGCCGGAGGAGTATCACGAACAGCAGTTGCTCCACTGGAACGCTTGAAGATTTTGCTACAGGTTCAGAATCCACACAGCATTAAATACAATGGAACAATTCAAGGTCTAAAATATATATGGAGAACTGAAGGTTTTCGTGGGCTGTTCAAAGGAAATGGTACTAACTGTGCGCGAATTGTCCCAAATTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCCAAAGGCATACTACATCTGTACCGGAAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTCTTTTACGTCTTGGGGCTGGAGCATGTGCGGGAATAATTGCCATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCAGAATAACTGTACAGACAGAGAAGTCCCCTTACCAGTACAGAGGAATGTTTCATGCCCTGTCAACTGTACTCAGGGAAGAAGGTCCACGTGCTTTATATAAGGGCTGGCTTCCTTCAGTCATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCAGTGTATGAGTCTTTGAAAGATTGGTTAATTAAATCTAATCCATTAGGTCTAGTTCAAGATTCTGAGTTGAGTGTGACAACTCGCCTGGCTTGTGGTGCTGCAGCTGGAACTATTGGACAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGAAGAATGCAGATGGTGGGTTGGAACCATGCTGCTTCTGTTGTAGCTGGTGATGGAAGAGGGAAGGTACCACTTGAATACACAGGCATGGTTGATGCTTTTAGGAAAACTGTTCGGTATGAGGGATTTGGCGCATTATACAAGGGTCTGGTGCCAAATTCTGTAAAGGTGGTCCCATCCATAGCAATTGCATTTGTAACATATGAGGTGGTGAAGGACATTTTAGGAGTGGAGATCAGAATATCAGATTGA 1038 0.4547 MASETKVVNLAEEAKLAREGVTTPSYAFTTICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYRKQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNPLGLVQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMVGWNHAASVVAGDGRGKVPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGVEIRISD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02352 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Gma03g02352 345 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Gma03g02352 345 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Gma03g02352 345 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Gma03g02352 345 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Gma03g02352 345 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Gma03g02352 345 PRINTS Mitochondrial carrier protein signature 244 266 IPR002067 GO:0055085
Gma03g02352 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 220 IPR018108 -
Gma03g02352 345 PANTHER BNAA09G39370D PROTEIN 5 340 - -
Gma03g02352 345 Gene3D Mitochondrial carrier domain 27 339 IPR023395 -
Gma03g02352 345 PANTHER SOLUTE CARRIER FAMILY 25 5 340 - -
Gma03g02352 345 SUPERFAMILY Mitochondrial carrier 31 332 IPR023395 -
Gma03g02352 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 336 IPR018108 -
Gma03g02352 345 Pfam Mitochondrial carrier protein 234 337 IPR018108 -
Gma03g02352 345 Pfam Mitochondrial carrier protein 31 116 IPR018108 -
Gma03g02352 345 Pfam Mitochondrial carrier protein 132 224 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02352 Gma-Chr3 48690301 48694718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02352 35 340 EF-hand Containing Proteins AT5G51050 39.088 6.29e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02352 K14684 - gmx:100777048 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02352 03 48690301 48694718 Gma03g02352 03 48690301 48694718 ECH
Gma19g02391 19 52473690 52478985 Gma03g02352 03 48690301 48694718 GST
Gma03g02352 03 48690301 48694718 Gma07g00542 07 5250435 5256060 PCT
Gma03g02352 03 48690301 48694718 Gma16g00243 16 2641472 2645653 PCT
Gma07g00542 07 5250435 5256060 Gma03g02352 03 48690301 48694718 PCT
Gma16g00243 16 2641472 2645653 Gma03g02352 03 48690301 48694718 PCT