Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00163 ATGGAGCTCGACCTCCGTTCGTTCCTTCACTCTCCCACCTCCTCCGACGACGCTCCTCACCGCACCATCGATGATATTCTCAACGACTGTGACACTTCCTCTTCCTCACCCTCCCCTCCTTCTTCTCCCTCTCACTCACTCTCCAACAATTCCCATCCTCAAAACTCCACACTCCAACCCGCACCCGATTCGTTTTCTCGGTTCAAACCCACTGAATTCTCCGACCGTGCACGCGTTTCGCGCCCGTTCTCCTCTCTACTCCACAGCGTCAGGTCCAATGCCAAGCCCGGCGCGGCGCTCGCCGCGGCGGCGGCGGCATCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATCTCCCGGAGGAAATCCGCGGCCGCGATCAGCGTCGAATCGAGTTTAATCGCTGCCAACGGCGATGATTCTTCCGCTGTTTCTGCCAAAGGCGAATTGGGCGAGCCTAGCGAGAAATTTGATCCAGTGCCGCCGATGATTCCTCCGCCTAGTGAAAGTGCTTCTGCTATTGGTGAACGTTTTGAGAGTGATGTGGAAATTGCCACTGATTTGAaggctggcagtgatgacattcaggtgcacagtgataataatattaatgctaatgttaatgatgatgatgatgatgaaaatgataatgattcttctatcgtgagtgaGGAGAAGAGGGACTTAGATAAAGTTGACTGTGATCATGAGAAGGATATGAATTCTGCACCGtttgatgaagatgatgatcgtgggtttgatggaaatgatgatgatgatgagagaatcacagctacgtatgcagctgtggaaacagaagaagaagaagaagaagaagaagaagaagtagtgaataaTGGTAGTAGTTCTATGGAAGATGTTAGGAATGAGGTGAGTGTTGGTGGTGGTGATGATGATGGTAGTTCATTAGGTGATGTTGCTGAGCTAGTGGAAGAGAGGCTCGAGGAATTGGAAAACAGAAGGGCTGCTAAGAGAGCCGAGAAGAAACGAGAGTCTTTGATGAAGCCTCTTGAATTGGCTGAGGAACTGGAGAAGAAGCGTGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCCATGAGGCTTGAGGACGTTCGGAGAGGGTCCATGACGTTGGGATACTTTGATGTTGATGCCGATAATGCGTTCACGAGGGCAATTTCGTCCCAAACATTCAGGCGTGAGCAAGGTTCCGCCCGAACCTTGGCAGTTCATGCTAATTACATTGCAGTGGGAATGTCAAAAGGGCTCATTGTTGTGTTTCCCAGTAAATATTCCATTCACCATGCTGACAACTCTGATGGAAAGATGATGATGCTTGCTATACAAGGTGATCGGTTGCATGCTCCAGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGTCATCTTACCCTGTGGGATGTACAGAAAGGGGTAGTGGTTAAAGTTATTAGTGGTGAGCATACAGCACCAGTAGTACATACATTGTTTCTAGGACAGGATCCTCAGAATACTCGTCAGTTCAAAGCAGTTACTGGTGACTGTAAGGGTCTGGTTCTCTTCCACATTATCTCAGTGGTTCCTTTATTTAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACGGGCTTGGTGCTTTCAGCTTCACCACTCCTTTTTGATGACTTCAGTGGAAGTGCTTCACCTTTTACCAGGGGAAACACCTCTGCCCCAGCCAGCAGTATAAGCAGCATGATGGGAGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAATGAAGCCCCTTCTTTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTGAGCCCTACGTTGCAAGTCTATGCTCAGCTCTCTAGGCCAGATGGAGTTCGGGAGGGTTCCATGCCATATACTGCATGGAAATACATGACGCAAACTTGTAGTTCTACTGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGGAAGGTTCTGGTTGCAAAGTTGGTCAAATCAGAATTAAAAGTATATGGAAGATGGTCTCTTGACGGTGCGGCTTTAGGTCTAGCATGGTTGGATGATCAGATGCTGGTAGTTCTCACTTCAAATGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTTTTTCCATAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCATCAATATATTTGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCTATTTATATACTGGGCCCAACACATCTTCTTGTTTCTCGTCTTCTCCCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGATTCTTTATGATGGCCATGCTCATGGAGTTGTTGACCTTCCTAGAACCTTGGATGCTGTACATGAAGCCATAATGCCCTTCTTGATGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCATATATTTCGGTGGCATTCTGCAATCAAATTGGAAAACTGGACCAATCCAATGATTCAAATAGTAGAAGCAATTCAGTGCATTCTGAGATAAAGGAACAATACGCCCGCGTTGGTGGAGTTGCCGTTGAATTTTGTTGTCATATCAAACGGACAAACATTCTTTTTGATGAAATTTTCAACAAATTTGTGGATGTTCAACAGAGAGAAACGTTTTTGGAGCTTCTGGAGCCATATATTTTGAAGGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTAGTAGAGTATTATAGCACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATATCATCCTTGGATTTTAATCAGGTTGTCAGGTTATGCCGGGAGCATGGACTATATAGTGCGCTGGTGTATGTCTTCAATAAAGGATTAGATGATTTTACGGCACCTCTGGAGGAGTTGTTTGCTGTCTTACAAAATAGCCAAAAGGAAAGTGCTACTGTGCTTGGGTATCGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCCTTTCCACCAGGCCGCGGAAGTATTCCTCCCACACGCTTACCATCTCTTAGAAGAGAACTTGTAGAGTTTTTGTTAAAGGACTCCTGTACTCCGAAATCACAGACAGTTTCAGACTTTGTGTCCAGACGACCCTGCCTGAATCTTTATCTTCTCTTAAAGTTAGACACTGAAGCTACATTAGACGTCCTCAGATGTGCTTTCATGGAAGATGGAATTTCAAATGCCAGCTCATCTTCACCAGATTCAGCCAATAAACCTATAGAGGAAGCAAAAAAGGAAAATGATATTACTGAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCTCTCATTCAAATAATTGATGTGAATATTGTTCCCACAGATACAACCTCTGGTAGTGGTGATGATGAATTGATAAAAGAGTGTCCTTCCAAGGACATAGGTTATGTGTTTGAGTTCATTGCGTATTATGTTGCTCTCCAAAGGGCTAAGATTTCAAAGGGTGTGCTTTGTCAAATATTGGAATATTTGACATCAGATAGTCAGTTTTCAACTAATGTTTCTGTTCAAGGGTCAACTCCAAAAAATAGAGAGAAGCAAGTGCTTGCACTTTTGGAAGTACTTCCTGAGCCAGACTGGGATGCATCATTTGTGCTAGATCTATGTGAGAGAGCAAAATATCATAAGGTTTGCGGATTGATCCATAGTATCAGACATGAATATGTGGCTGCATTGGATAGTTATATGAAAGATGTAGATGAGCCTGTTCATGCTTTCTCCTTTATTAACAGAGCATTCTCACAGTTGACTGACAATGACCATGCAGCTTTTCGGTCAGCAATCATATTGCGAATTCCTGAGTTGGTTGAACTAAGCAGGGAGGGCGCGTTCCATATGGTTATCAGTCATTTTAGGGATGAAAGTTCTCGTATCATAACTGAACTTCACTCTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTTCATTTATTTGGCACCCTAGACCTGTCTAATTTGAGAAAGGATGATACTATGAATCCCCTTAATAGAAGGCAGGTCAAGGATCACCCACAAGGAGTCAAAGATTACTTAGAGAATATATCTAATTTCCCCAAGTACATGTGTGAAAATCCTATTCAAGTGCCAGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCAAGTACGAAGGTGGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGCCTGTGCCAAGAATATGGCATTATAGATGCATCGGCGTTCTTATTAGAAAGGGTTGGTGATGTTGGTAGTGCTCTTTCACTTACACTTTCTGATCTAAATAATAAGTTTGTTGATCTTGATGCCTCTGTGGAAGCTGTAGTTTTAAACCATCGCAGAGATGGTTCTTCACATATGGAAATATTCAACAGTGTTTTAAAAACAAAGGAGGTAAATGACATCCACAATTTATTGCGTGCCTGTATTGGTCTGTGTCAGCGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAGGCACATTGGTTTAAATTACTTGACTCGTTTTGTGACCCACTGATGGATTCAAATGTTGAAGAGAGAGCACATGAAAGTAAAAATTATTTTGGAGTGCTAGCTGGATCAGCAGATTCACAACAGGACAAAGACACCCATGAAAACAGTTGGAAAATTTTAAAGTCTCAGAATGGTCATATCTTGAAAAAATTGCTATCCCAGTTCATTAAAGAGATTGTTGAGGGAATGATTGGTTTTGTTCACCTTCCAACTATCATGTCTAAACTCCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACATACCATATTGGGAATGCTGGGAACATACGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCGTTAATAGAGGATGATTCTTTTTATACTATGAGTTTACTCAAAAAAGGGGCCTCCCATGGATACGCTCTCGGGAGTCTCGTGTGCTGTGTTTGTAATTGCCCCCTTACAAAGAACTCTGTTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATCTCCAATGTGAAGTTTCGGAAATTGAGGAATCGAGTAAAACATCTTCATCTGGATGCCCTGTATGCATGCCTAACCAGAAATCCCAGCAGTCTAGAAACAAATCAATCATTGCAGCAAATGGCTTGGTCAATAAATTCTCATCAAGGCACCAATACCCCCATGGAAGTTCCATTCATCCTCATGACAGTGATTTGTCAGATAATATGTATGGACAACAACAGATATCACGGTTCCAGATCTTGAGCAGCTTGCAGAAGAATCAGAGATTTATGCAAATAGAAAACTTGCCTCCATTGAAGCTTGCCCCACCTGCTGTGTACCATGAAAAGGTAAGTAAAGTGGCAAACTTTCTGACCGGAGAAACTAGCAATAGTTCCAGTGCTATTGAGAAACAAAATAGAAACAAGCATAATCGGGAGCTGAGATTTAAGGGTTCATCAATTCGATTTCCTTTAAAATCAACTATATTTGGCAAGGAGAAGACCAATAAACGGTGA 5733 0.4132 MELDLRSFLHSPTSSDDAPHRTIDDILNDCDTSSSSPSPPSSPSHSLSNNSHPQNSTLQPAPDSFSRFKPTEFSDRARVSRPFSSLLHSVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAAISVESSLIAANGDDSSAVSAKGELGEPSEKFDPVPPMIPPPSESASAIGERFESDVEIATDLKAGSDDIQVHSDNNINANVNDDDDDENDNDSSIVSEEKRDLDKVDCDHEKDMNSAPFDEDDDRGFDGNDDDDERITATYAAVETEEEEEEEEEEVVNNGSSSMEDVRNEVSVGGGDDDGSSLGDVAELVEERLEELENRRAAKRAEKKRESLMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEDVRRGSMTLGYFDVDADNAFTRAISSQTFRREQGSARTLAVHANYIAVGMSKGLIVVFPSKYSIHHADNSDGKMMMLAIQGDRLHAPVTSMSFNQQGDLLLAGYGDGHLTLWDVQKGVVVKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLFHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFTRGNTSAPASSISSMMGGVVGGDAGWKLFNEAPSLVEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQTCSSTENMSAEAVERVSLLAIAWERKVLVAKLVKSELKVYGRWSLDGAALGLAWLDDQMLVVLTSNGQLYLFSKDGTVIHQTSFSIDGIGGDDLVSYHTHFINIFGNPEKAYHNSVAVRGASIYILGPTHLLVSRLLPWKERISVLRKAGDWMGALNMAMILYDGHAHGVVDLPRTLDAVHEAIMPFLMELLTSYVDEVFSYISVAFCNQIGKLDQSNDSNSRSNSVHSEIKEQYARVGGVAVEFCCHIKRTNILFDEIFNKFVDVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFTAPLEELFAVLQNSQKESATVLGYRMLVYLKYCFTGLPFPPGRGSIPPTRLPSLRRELVEFLLKDSCTPKSQTVSDFVSRRPCLNLYLLLKLDTEATLDVLRCAFMEDGISNASSSSPDSANKPIEEAKKENDITETQNALVQNTVDALIQIIDVNIVPTDTTSGSGDDELIKECPSKDIGYVFEFIAYYVALQRAKISKGVLCQILEYLTSDSQFSTNVSVQGSTPKNREKQVLALLEVLPEPDWDASFVLDLCERAKYHKVCGLIHSIRHEYVAALDSYMKDVDEPVHAFSFINRAFSQLTDNDHAAFRSAIILRIPELVELSREGAFHMVISHFRDESSRIITELHSHPRSLFLYLKTLIELHLFGTLDLSNLRKDDTMNPLNRRQVKDHPQGVKDYLENISNFPKYMCENPIQVPDDLIELYLELLCKYEGGSVLKFLEMFDSYRVEHCLRLCQEYGIIDASAFLLERVGDVGSALSLTLSDLNNKFVDLDASVEAVVLNHRRDGSSHMEIFNSVLKTKEVNDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLMDSNVEERAHESKNYFGVLAGSADSQQDKDTHENSWKILKSQNGHILKKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKHTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYALGSLVCCVCNCPLTKNSVSSGIRIFNCGHAIHLQCEVSEIEESSKTSSSGCPVCMPNQKSQQSRNKSIIAANGLVNKFSSRHQYPHGSSIHPHDSDLSDNMYGQQQISRFQILSSLQKNQRFMQIENLPPLKLAPPAVYHEKVSKVANFLTGETSNSSSAIEKQNRNKHNRELRFKGSSIRFPLKSTIFGKEKTNKR 1910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00163 1910 CDD RING-H2 1719 1768 - -
Gma16g00163 1910 ProSiteProfiles Zinc finger RING-type profile. 1719 1767 IPR001841 -
Gma16g00163 1910 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 496 IPR001680 GO:0005515
Gma16g00163 1910 MobiDBLite consensus disorder prediction 140 311 - -
Gma16g00163 1910 SUPERFAMILY RING/U-box 1713 1770 - -
Gma16g00163 1910 SUPERFAMILY WD40 repeat-like 408 748 IPR036322 GO:0005515
Gma16g00163 1910 Pfam Golgi CORVET complex core vacuolar protein 8 936 1120 IPR025941 -
Gma16g00163 1910 MobiDBLite consensus disorder prediction 28 64 - -
Gma16g00163 1910 MobiDBLite consensus disorder prediction 271 287 - -
Gma16g00163 1910 MobiDBLite consensus disorder prediction 1 73 - -
Gma16g00163 1910 PANTHER VACUOLAR PROTEIN SORTING VPS41 291 1838 IPR045111 GO:0006623
Gma16g00163 1910 Coils Coil 315 342 - -
Gma16g00163 1910 Pfam Region in Clathrin and VPS 1436 1503 IPR000547 GO:0006886|GO:0016192
Gma16g00163 1910 PANTHER - 291 1838 - -
Gma16g00163 1910 Coils Coil 1140 1160 - -
Gma16g00163 1910 MobiDBLite consensus disorder prediction 221 250 - -
Gma16g00163 1910 ProSitePatterns Trp-Asp (WD) repeats signature. 474 488 IPR019775 -
Gma16g00163 1910 Gene3D - 332 526 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00163 Gma-Chr16 1643388 1656671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00163 K20178 - gmx:100785710 3520.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00163 16 1643388 1656671 Gma16g00163 16 1643388 1656671 ECH
Gma07g00468 07 4295201 4308130 Gma16g00163 16 1643388 1656671 GST