Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00162 ATGTCTTTCACTGCAACTAAGTTTGCACCTTCTCCTCTCCCTCTCAATTCCACCACCCCCAGATCCAATGACAAGCCTCTCTCTTTCTCCTTCGATCACTCCAAGCCCAACCCTTCTTCCTCTTTCCTTGGATCCACTCGCAAGCTTCTTCGCTTCAATGCTCTCGCTAAACCTCATGCTCACACACGTGCTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTGCTTGTTACAAAAGAGGAAGGGTTGGAGCTCTATGAAGATATGATATTAGGGAGGTTCTTTGAGGACAAGTGTGCTGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTGTCAACTGGGTTCATCAAGCTTCTGAAGAAGGAAGATTCTGTGGTGAGCACCTACAGAGATCATGTTCATGCATTGAGTAAGGGGGTCCCGTCTCGGGAAGTGATGAGTGAACTGTTTGGGAAGGCAACAGGGTGCTGCCGAGGTCAAGGTGGTTCAATGCATATGTTCTCGAAAGAGCACAACTTGCTCGGTGGGTTTGCCTTTATTGGTGAAGGAATTCCGGTGGCCACCGGGGCTGCATTTTCGAGCAAGTACAGAAGAGAGGTTTTGAAGCAGGCAGATTGTGATCATGTGACGTTGGCATTTTTTGGAGATGGGACTTGTAATAATGGGCAGTTCTATGAATGCCTGAACATGGCAGCTCTGTGGAAATTGCCAATTGTGTTTGTGGTGGAGAATAATTTGTGGGCTATTGGGATGTCGCATCTCAGAGCAACCTCAGATCCTCAGATATGGAAGAAAGGGCCAGCATTTGGAATGCCAGGGGTTCATGTAGATGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCAAAGGAGGCAGTTGGAAGGGCTAGAAGAGGTGAGGGACCAACTCTAGTGGAATGCGAGACCTATAGATTTAGAGGGCATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTGCTGAGAAGGAACACTATGCCGGTAGGGACCCCATCACTGCATTGAAGAAATACCTTTTTGAGAACAATTTAGCCAATGAGCAAGAATTGAAGACCATAGAGAAGAAAATCGATGAGATCCTCGAGGACGCTGTTGAGTTTGCAGACAAAAGCCCTCTTCCACCCCGCAGTCAGCTTCTGGAGAATGTCTTTGCTGATCCAAAAGGCTTTGGAATCGGACCAGATGGAAGCTATAGATGTGAGGATCCAAAGTTCACTCAAGGCACAGCTCATGTCTAA 1299 0.4742 MSFTATKFAPSPLPLNSTTPRSNDKPLSFSFDHSKPNPSSSFLGSTRKLLRFNALAKPHAHTRASSSPVAAVLLERTSNLLVTKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPSREVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKQADCDHVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKKYLFENNLANEQELKTIEKKIDEILEDAVEFADKSPLPPRSQLLENVFADPKGFGIGPDGSYRCEDPKFTQGTAHV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00162 432 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 84 405 IPR017597 GO:0004739|GO:0006086|GO:0043231
Gma16g00162 432 Gene3D - 51 413 - -
Gma16g00162 432 MobiDBLite consensus disorder prediction 1 42 - -
Gma16g00162 432 Coils Coil 363 390 - -
Gma16g00162 432 CDD TPP_E1_PDC_ADC_BCADC 90 388 - -
Gma16g00162 432 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA 5 432 - -
Gma16g00162 432 Pfam Dehydrogenase E1 component 94 394 IPR001017 GO:0016624
Gma16g00162 432 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 81 407 IPR029061 -
Gma16g00162 432 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 5 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00162 Gma-Chr16 1636697 1640193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00162 5 432 Acyl Lipid Metabolism Gene Families AT1G01090 78.704 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00162 K00161 - gmx:100811207 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00162 16 1636697 1640193 Gma16g00162 16 1636697 1640193 ECH
Gma07g00467 07 4287207 4290801 Gma16g00162 16 1636697 1640193 GST