Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01370 ATGCTTgtggcattgctcttgctggtggcattgAGCAATGCCGTGAGAGTTAATGGAAATGGTGGGCAGTGTGGTTCCAACCCAAGACTAGACCCTAGACCTCACAGTGTCTCCATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACACTCAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGATAAGGGTGGGGCTCAGCTCTATGTTCCTCCGGGAAAATGGCTCACTGGAAGCTTCAATCTCACAAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGAACTCAGGATCCATCGCATTGGGATGTTGTTGAACCCTTGCCTTCTTATGGCCGAGGGCTTGAAGTTCCCGGGGGAAGATATCAGAGTTTGATAAATGGATACATGTTACATGATGTGGTCGTAACAGGTAATAATGGAACCATTGATGGCATGGGAATGGTATGGTGGGATTGGTATAGCACTCATTCCTTGAACCACAGTCGTCCTCATTTGGTTGAAATTGTGGCATCTGATTATGTGGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCTTATAGCATACACCCAGTTTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTACTCCTCCAGAATCCCCTTATACTGTTGGTATAGTGCCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTATTGTTGCCATGGGATTTGATGCAATTTCTCTTAAAAGTGGCTGGGATGAGTATGGCATTGCTTATGGCAGGCCTACTGAGAATGTACACATCAGAAGGGTGCATCTACATGCATTTTCTGGCTCTGCTCTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATGTTCTAGTGGAGCATGCTCATCTTTTCAACTCAAAAAGTGGCATTGAGTTCAGAACCACCAAGGGAAGAGGTGGTTATATGAAAGAAATTGTTATGTCAGACATACAAATGGAGAATGTCCACACAGCAATTGCTGCCACAGGTAATTGTGGGTCTCATCCTGATGACAAGTTTGATCCAAATGCACTCCCACATTTGGATCACATTACCTTGAAGGATGTCACAGGTACAAACATTTCCATTGCTGGAAACATAGCTGGAATAGAAGAATCCCCTTTCACAAACATATGCCTCTCCAACATAACCTTGTCCACAAATTCTGTTTCTCCAATTACTTGGGAATGCTCAAATGTGTCTGGTTTTTCAGACTCAGTGCTCCCAGAACCTTGTCCCGAACTTGGCAACCCCTCATATGATTCTTCCTCATCATGTTTCTACCTGCTGAGTGTCAGTGGCAAAACTGTAGTGCAGTGA 1359 0.4224 MLVALLLLVALSNAVRVNGNGGQCGSNPRLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGTQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWDWYSTHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISTPPESPYTVGIVPDSSDNVCIEDCIVAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGISNVLVEHAHLFNSKSGIEFRTTKGRGGYMKEIVMSDIQMENVHTAIAATGNCGSHPDDKFDPNALPHLDHITLKDVTGTNISIAGNIAGIEESPFTNICLSNITLSTNSVSPITWECSNVSGFSDSVLPEPCPELGNPSYDSSSSCFYLLSVSGKTVVQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01370 452 PANTHER PECTIN LYASE-RELATED 2 446 - -
Gma15g01370 452 Pfam Pectate lyase superfamily protein 37 94 IPR024535 -
Gma15g01370 452 Gene3D - 26 418 IPR012334 -
Gma15g01370 452 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 446 - -
Gma15g01370 452 Pfam Glycosyl hydrolases family 28 135 414 IPR000743 GO:0004650|GO:0005975
Gma15g01370 452 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01370 Gma-Chr15 12218557 12221476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01370 1 440 Glycoside Hydrolase AT3G16850 63.265 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01370 - - gmx:100777503 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01370 15 12218557 12221476 Gma15g01370 15 12218557 12221476 ECH
Gma15g01370 15 12218557 12221476 Gma09g00370 09 3450113 3452674 GST