Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01317 ATGGCCGACAAGTACAACCTGAAGAACCCCGCCGTGAAGCGGATCCTCCAGGAGGTTAAGGAGATGCAGTCCAACCCTTCCGACGATTTCATGAGCCTCCCTCTCGAGGAAAATATATTTGAGTGGCAATTTGCGATTAGAGGGCCTCGTGATACGGAATTTGAGGGTGGTATTTATCATGGAAGGATCCAGTTGCCTTCAGAGTATCCATTCAAACCCCCTTCATTCATGTTGTTGACACCTAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTTTAGTTGCACTGATTGCGTTCATGCCTACCAACCCAAATGGTGCATTGGGATCTTTAGACTACAAGAAAGAAGAGAGGCATACACTGGCCATTAAGTCTCGTGAAGCTCCTCCAAAATTCGGGACTCCTGAACGTCAAAAGCTGATTGATGAGATACACGAGTACATGCTAAGCAAAGCACCACCTGTTCCTCAACCTAGTGCCACAGAGGCTTCTGAAGAGAACCCCAGAAATGAAGAGGCCGAGACACAGGTCAATTCACCAAATCCCGAGTCCTTACCTGCAGGAGAGGGTATTACAGATCAAGAAGTTGATGGAATTGTGGAAGAACAAGAAGTCATCCTTGCAAACCCTGCAGGAGTTGAAGTTTCAAGGGAGGTTCAACCAAGTGTTTCAAGGAATGAAGTGCTCCAAAAGTCAGACACAAGGGCTCAGAATCCTAAGCCAGAGACGAGGGTTCAGAAACATGATGATCGGTTGTTCACGTTGGCAGCTATTGGACTCACTATTGCAATTGTGGTCCTTTTGCTCAAAAAATTCCTCAAATCTACACAACATGGGGCACTTTTCTCGGATGGATCTTAA 921 0.4636 MADKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERHTLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQPSATEASEENPRNEEAETQVNSPNPESLPAGEGITDQEVDGIVEEQEVILANPAGVEVSREVQPSVSRNEVLQKSDTRAQNPKPETRVQKHDDRLFTLAAIGLTIAIVVLLLKKFLKSTQHGALFSDGS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01317 306 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Gma15g01317 306 SUPERFAMILY UBC-like 11 132 IPR016135 -
Gma15g01317 306 MobiDBLite consensus disorder prediction 239 256 - -
Gma15g01317 306 MobiDBLite consensus disorder prediction 171 210 - -
Gma15g01317 306 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Gma15g01317 306 MobiDBLite consensus disorder prediction 234 265 - -
Gma15g01317 306 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 306 - -
Gma15g01317 306 SMART ubc_7 13 173 - -
Gma15g01317 306 CDD UBCc 12 127 IPR000608 -
Gma15g01317 306 Gene3D Ubiquitin Conjugating Enzyme 2 173 IPR016135 -
Gma15g01317 306 PANTHER BNAC01G21910D PROTEIN 6 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01317 Gma-Chr15 11690113 11692930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01317 1 304 Miscellaneous Gene Families AT3G17000 66.019 5.99e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01317 K10578 - gmx:100798396 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01317 15 11690113 11692930 Gma15g01317 15 11690113 11692930 ECH
Gma15g01317 15 11690113 11692930 Gma09g00326 09 3062058 3064528 GST