Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00326 ATGGCGGACAAGTACAACCTCAAGAACCCCGCCGTGAAGCGGATCCTCCAGGAGCTCAAGGAGATGAACTCCAACCCTTCCGACGATTTCATGAGCCTCCCTCTCGAGGAAAATATATTTGAATGGCAATTTGCGATTAGAGGGCCTCGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATTCAGTTGCCTTCAGAGTATCCATTCAAACCCCCTTCATTTATGTTGTTGACTCCTAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAGCCATCATGGAGCGTGAGGACTGCTTTAGTTGCATTGATTGCATTCATGCCTACCAACCCAAATGGTGCATTGGGATCGTTAGACTACAAGAAAGAAGAGAGGCGTACACTGGCAGTTAAATCTCGTGAAGCTCCTCCTAAATTCGGGACTCCTGAACGTCAAAAGCTGATCGATGAGATACACGAGTACATGGTAAGCAAGGCACCTCCTGTTCCTCAACCTAGCGCCAGAGAGGTTATTCTAGATCAAGAAGTTGATGGAATTGTGGAAGAACAAGAAGAAGTCCTTGCAAATGCTAACCCTGCAGGAGTTGAAGCTTCAAGGGAGGTTCAACCTAGTGTTTCAAGGTATGAGGTGCTCCAAAAGTCAGACACAAGGGTTCAGAATCCTAAGCCAGAGACGAGGGTTCAGAAACCTGATGATCGGTTGTTCACATTGGCAGCTATTGGACTCACTATTGCAATTGTTGTCCTTTTGCTCAAAAAGTTCATTAAATCTACCCAACATGGGGCACTTTTCTCCGATGGATCTTAA 846 0.4563 MADKYNLKNPAVKRILQELKEMNSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAVKSREAPPKFGTPERQKLIDEIHEYMVSKAPPVPQPSAREVILDQEVDGIVEEQEEVLANANPAGVEASREVQPSVSRYEVLQKSDTRVQNPKPETRVQKPDDRLFTLAAIGLTIAIVVLLLKKFIKSTQHGALFSDGS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00326 281 Gene3D Ubiquitin Conjugating Enzyme 2 173 IPR016135 -
Gma09g00326 281 SUPERFAMILY UBC-like 11 133 IPR016135 -
Gma09g00326 281 SMART ubc_7 13 173 - -
Gma09g00326 281 PANTHER BNAC01G21910D PROTEIN 241 281 - -
Gma09g00326 281 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Gma09g00326 281 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Gma09g00326 281 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 241 281 - -
Gma09g00326 281 CDD UBCc 12 127 IPR000608 -
Gma09g00326 281 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 179 - -
Gma09g00326 281 PANTHER BNAC01G21910D PROTEIN 6 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00326 Gma-Chr9 3062058 3064528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00326 1 279 Miscellaneous Gene Families AT3G17000 63.072 9.75e-131 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00326 K10578 - gmx:100811370 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00326 09 3062058 3064528 Gma09g00326 09 3062058 3064528 ECH
Gma15g01317 15 11690113 11692930 Gma09g00326 09 3062058 3064528 GST