Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01282 ATGGAGGCAAAGTCACTGCTCCAGGGTTCATCTCTTAAACCTTCTTATCCGCTCCCTAAGCTTTCAAAAACCACGATGATGACAGCTAATTGCGTTAGATTCAGTTTCAACTACAACAACCCATGTCTCTTATTCGCAAATGGGTACCCTTCTTCTTCTTCACTTCCACTTTCTCTTCAGAATAAGCCCAGAAAATCAGCATCAGTGATTGTGAGTGCCCGAAAGAAAGATAAGAAAGAAGATACCCATAGCTCTGTTCCCAAACCCGATGAGGTCACGGGTTTCTTCCCCGAAGCCGTGCTCCTTAAAAAGAGAACAGTTGAGGAAGAAGGTAAGCTTCTCCCGGAGTTTGAAGACGCTGAGGAAAGACAACTCTTTGAAGCGCTGATGCTTGAGCTAGATAGTGATATGGATGTTGAAATATTGCGCCACTACGAGGTTATGTACTTAATTCATGAGAAGCATGAAGAAGAGGTTGCAGCTGTCAATGAGAAAATTCAAGACTTTTTGAGGGAGAAGAAAGGGCAGGTTTGGAGACTGAATGATTGGGGTATGAGAAGGCTAGCTTACAAAATAAAAAAAGCTAACAATGCCCACTACATGCTGATAAACTTCGAGTTGGATGCCAAATATATCAACGATTTCAAGACTCTGTTGGACCAAGATGAAAGAGTTATTCGGCATCTTGTGATAAAGAGGGATGAGGCAATCACTGAAGATTGCCCTCCTCCTCCGGAGTTTCATACACTGCGTGCAAATGCAGATGATAATGATGATGAAGAATTTGATGAAAATTATGATGATGACTGGGATGGTGAAGATGAGGAGGATGGCAATGACGGCGATGATGGCGAAAATGGTATTATTTTTGTAGATGACGACGATGACGATATAGATTCTAGAAATGAGACACCAGCAAATGTTAGACAACCAGATATAAGAAAATTGAGGGCTGAGAATGTAGGTAGattcaggagtggccttgggtcttcggaggaaatcgactctgacaacagtgacatcgaaactccAGCGTCGAAGGTGGACGGCGCGTTGGGAAATGAAGTTGCGCCGAGGAGGCCTACCGATAACTCGAACGATGGGCTCTCGACCCAGGGGTACACACCATTAACCATCGATCCAAACGACATTGAGAAACCACTGGGTATTGACTGTAAACAATGGGCACACTGCCACACTCATAAAGCACGCAGGTCAGAGCACATGCATGGAAATGAGGTAGAACCCGCCACGCGGTCCACGGTGGTGCCAGAGAACAACTCTCGTGATGACAGACCATGTAGAGCACAAAACAAGCTAGGCGATAGGCTCGAAGACTCGACAACAACGACACAAAGCTTTCATCAAAAAGGAAATGATGCAGATGAACGTTGTCATGACATGGCAGAGTCAAACATGGTAAAAGATAACCAAGCACGTGACCCAGCCGTGGATGGAGGGGGTTCACAAATTTGGTGGGCCTTACTAATAGTGCCAGTGCTGAAACCCAAAAACAGATTTGGCCCAACCGATTAA 1536 0.4297 MEAKSLLQGSSLKPSYPLPKLSKTTMMTANCVRFSFNYNNPCLLFANGYPSSSSLPLSLQNKPRKSASVIVSARKKDKKEDTHSSVPKPDEVTGFFPEAVLLKKRTVEEEGKLLPEFEDAEERQLFEALMLELDSDMDVEILRHYEVMYLIHEKHEEEVAAVNEKIQDFLREKKGQVWRLNDWGMRRLAYKIKKANNAHYMLINFELDAKYINDFKTLLDQDERVIRHLVIKRDEAITEDCPPPPEFHTLRANADDNDDEEFDENYDDDWDGEDEEDGNDGDDGENGIIFVDDDDDDIDSRNETPANVRQPDIRKLRAENVGRFRSGLGSSEEIDSDNSDIETPASKVDGALGNEVAPRRPTDNSNDGLSTQGYTPLTIDPNDIEKPLGIDCKQWAHCHTHKARRSEHMHGNEVEPATRSTVVPENNSRDDRPCRAQNKLGDRLEDSTTTTQSFHQKGNDADERCHDMAESNMVKDNQARDPAVDGGGSQIWWALLIVPVLKPKNRFGPTD 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01282 511 MobiDBLite consensus disorder prediction 70 87 - -
Gma15g01282 511 MobiDBLite consensus disorder prediction 237 314 - -
Gma15g01282 511 ProSitePatterns Ribosomal protein S6 signature. 184 193 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma15g01282 511 CDD bS6 144 233 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma15g01282 511 MobiDBLite consensus disorder prediction 359 378 - -
Gma15g01282 511 MobiDBLite consensus disorder prediction 256 300 - -
Gma15g01282 511 SUPERFAMILY Ribosomal protein S6 142 242 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma15g01282 511 MobiDBLite consensus disorder prediction 403 462 - -
Gma15g01282 511 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 105 255 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma15g01282 511 Coils Coil 152 172 - -
Gma15g01282 511 MobiDBLite consensus disorder prediction 69 89 - -
Gma15g01282 511 MobiDBLite consensus disorder prediction 327 380 - -
Gma15g01282 511 Hamap 30S ribosomal protein S6 [rpsF]. 142 235 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma15g01282 511 Pfam Ribosomal protein S6 144 232 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma15g01282 511 TIGRFAM S6: ribosomal protein bS6 143 234 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma15g01282 511 Gene3D - 138 240 IPR014717 -
Gma15g01282 511 MobiDBLite consensus disorder prediction 425 442 - -
Gma15g01282 511 PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL 105 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01282 Gma-Chr15 11350483 11357648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01282 - - gmx:100790128 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01282 15 11350483 11357648 Gma15g01282 15 11350483 11357648 ECH
Gma15g01282 15 11350483 11357648 Gma09g00298 09 2810293 2813407 GST