Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00187 ATGAAACAAATAGAAATGGAAAGTAACGCATCAGCACTAGCAAAGAAAGTTTGGAGCATGGTACGTGTGGTGTTGTTCATGCTTCGAAAAGGCATAACAAAGGGGAAGCTCATGATGGACCTCAACATGATGCTGAAACGCCGCGGCAAGCTCGCCGGCAAAGCCATTGCCAACTTAATGTCGTCCCACCACCACCACAACCGCGGTGGGTCCCACAACTCTCACCACCTTAAGTTCTCTGCCCCAAGGGAGTACGAGTTCAGCTGCAGCAACACGCCCCACAACTTCTTCTTCCCCACAGGAGGGAAGCACCACCGCCACCACTTCTTCGCCTGTGTCCACGCGCCTCCCACGCAGGACGACGACGTTGTGACGGTGAACGCAATGAAGGCAGTGATGGAGATGCTCAACAACAACAACAACGACGCCGTTAAGGTTGAAGCGTCCCCTGCGCTGCCAGGGTTTGGACGGAGCCCTATGGTGAGGCAGCTTAGGGTTACGGACTCGCCGTTCCCTCTGCGAGACGCCGATCAAGACAACGACCACCTGGTCGATAAGGCCGCCGAAGATTTTATAAAGAGGTTTTACAAGGAGTTGAGGAAGCAGGATTAA 612 0.5376 MKQIEMESNASALAKKVWSMVRVVLFMLRKGITKGKLMMDLNMMLKRRGKLAGKAIANLMSSHHHHNRGGSHNSHHLKFSAPREYEFSCSNTPHNFFFPTGGKHHRHHFFACVHAPPTQDDDVVTVNAMKAVMEMLNNNNNDAVKVEASPALPGFGRSPMVRQLRVTDSPFPLRDADQDNDHLVDKAAEDFIKRFYKELRKQD 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00187 203 Pfam Cotton fibre expressed protein 184 202 IPR008480 -
Gma15g00187 203 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 6 202 - -
Gma15g00187 203 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00187 Gma-Chr15 1478083 1479023 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00187 - - gmx:100786928 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03178 13 45934714 45937247 Gma15g00187 15 1478083 1479023 ECH
Gma08g00329 08 2793855 2795189 Gma15g00187 15 1478083 1479023 ECH
Gma15g00187 15 1478083 1479023 Gma07g00156 07 1347676 1348572 ECH
Gma15g00187 15 1478083 1479023 Gma08g01850 08 16647567 16648483 ECH
Gma15g00187 15 1478083 1479023 Gma13g03178 13 45934714 45937247 ECH
Gma15g00187 15 1478083 1479023 Gma15g00187 15 1478083 1479023 ECH
Gma15g00187 15 1478083 1479023 Gma04g00781 04 7403736 7404329 ECH
Gma15g00187 15 1478083 1479023 Gma06g00774 06 7021460 7022268 ECH
Gma13g03178 13 45934714 45937247 Gma15g00187 15 1478083 1479023 GST
Gma15g00187 15 1478083 1479023 Gma07g00156 07 1347676 1348572 PCT
Gma15g00187 15 1478083 1479023 Gma08g01850 08 16647567 16648483 PCT
Gma07g00156 07 1347676 1348572 Gma15g00187 15 1478083 1479023 PCT
Gma08g01850 08 16647567 16648483 Gma15g00187 15 1478083 1479023 PCT