Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01850 ATGGAAAGCAATACACCTGTAATAGCAAAGAAAGAATTGAGCATAATACATGTGGCCTTGTTCATGTTGAGGAAAGGCATCTCTAAGGGGAAGCTAATGATGCACCTCAACAACATGATGCTCAAACGCCCCGGCAAAGCCATCGCCAACCTCATGTTCCACCACAACCACGGTGTCTCCGGCAACAGCCTCCATTTCTCCGCCGCCAGGGAGTACGAGTTCAGCTGCAGCAACACTCCAAACAACTTCTTCGCGGCCATTGCCAGCAGCAACAAGCGCCACCGCCACATTCCCTTCTTCACGTGCGCTCACGCGCCGCCCACCCTCGACGACGACGTGGCTACGGTTAATGCAGTTAAGGGCGTGTTGGAGATGCTGAACAATGAGACCGTCGTGGAGGCATCACCGGCCGCGCTTCCCGGGTTCGGACGTAGCCCTATGGTGAGGCAGTTGATCAGGGTGACGGACTCTCCGTTCCCACTTGTTGAGTCCCAGGATGACAAGGACAACCAAGTGGACAAGGCTGCGGAAGAGTTCATAAAGAGGTTCTACAAAGAGTTGAGGAAGCAGACTTGA 576 0.5399 MESNTPVIAKKELSIIHVALFMLRKGISKGKLMMHLNNMMLKRPGKAIANLMFHHNHGVSGNSLHFSAAREYEFSCSNTPNNFFAAIASSNKRHRHIPFFTCAHAPPTLDDDVATVNAVKGVLEMLNNETVVEASPAALPGFGRSPMVRQLIRVTDSPFPLVESQDDKDNQVDKAAEEFIKRFYKELRKQT 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01850 191 Pfam Cotton fibre expressed protein 169 190 IPR008480 -
Gma08g01850 191 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 1 190 - -
Gma08g01850 191 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01850 Gma-Chr8 16647567 16648483 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01850 - - gmx:100786760 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00156 07 1347676 1348572 Gma08g01850 08 16647567 16648483 ECH
Gma08g00329 08 2793855 2795189 Gma08g01850 08 16647567 16648483 ECH
Gma15g00187 15 1478083 1479023 Gma08g01850 08 16647567 16648483 ECH
Gma08g01850 08 16647567 16648483 Gma08g01850 08 16647567 16648483 ECH
Gma08g01850 08 16647567 16648483 Gma04g00781 04 7403736 7404329 ECH
Gma08g01850 08 16647567 16648483 Gma06g00774 06 7021460 7022268 ECH
Gma07g00156 07 1347676 1348572 Gma08g01850 08 16647567 16648483 GST
Gma13g03178 13 45934714 45937247 Gma08g01850 08 16647567 16648483 PCT
Gma15g00187 15 1478083 1479023 Gma08g01850 08 16647567 16648483 PCT
Gma08g01850 08 16647567 16648483 Gma13g03178 13 45934714 45937247 PCT
Gma08g01850 08 16647567 16648483 Gma15g00187 15 1478083 1479023 PCT