Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02277 ATGGGAGTTGTGACTGTTTCTGGCTCAGCTTCTCGGACTCCATTAGGATTCAATACGAAGTTTTCCACTCATCGTTTGAAGAGACCTTTAATTGTAGCATTTAAAGGGGATAAGCACAATGACTCAGCTTTGGTTGCAACACAAGAGAAAATTCCTGTGCCGGTTGAAACGGCAAAGAAGACGCAGAAAAAAAGGATAGGAAAAAGTAACAAACTACCTAAGAGAGAAAGTTCTCCATCTTCCATGGATGTGGACTACAATGAAGCTGCTGCTATGCTTGAAAATATATACAAACTCAGCCCTGCTTCTGATACCGGTAATGCAGAATGTATAGATGATAAAATCAAAAGAGTCTCTCGGAGAGGGAAGAAGGTTGTTGATGAAAGTGAAGAAAAGGAGTTAAAGGGTGATAGGGTGGTCAGAAGGCAGAACAAGAACAAGAAAGCTAAACGGTTGACTCTTGATCAGAGAATTTCATTAAAGAATAACAAAAGAGGGGACGAAGTCATTCCGACTCGAAAGAAAAGAAACTTTAGGAACAGAATTGAGAAGATTGAAGAACTTATTAGGGAATATTCAGTATCAAATGATTTTATCAGTATGGATTGGAAAAGAATGAGAATACCTCCCGTTCTTTCTTCTTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGCTGAGCATTAAACTACTGTCAATTTTTTTAGCACTGCTTCAAGTGAAAGAAGATTTACAGAAGGAGCTAGCAAGAGAACCTGCAGATGGTGAACTAGCTGATGCAACAAACATGAGCATTACTCAAGTAAAGAAAGCAATAGATGTTGGTCAAGCTGCTAGAAACAAACTCATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCCCTAGGTTTCAAGATCTTTGTCAGGCAGGAGTAAAGGGACTTATAACAGCAATTGATCGTTTTGAGCCAAACAGGAGATTTCGGTTATCAACATATAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCGATGACTCTCTCAAGCTTCATACGTGTTCCCTTTGGACTTGAATCCGTTCGAGCAGAAATCCAAAAGGCTAAAACTGAGTTAACATTTAAGCTTCAGAGGTCACCAACAGAGGAAGAAATAATAGAAAGAGTTCATATATCCCCTGAAAGATACCATGACATAATTAAGGCATCAAAATCCATTCTTTCGCTGAACTCAAGACATACAACTACACAAGAGGAGTTCATTAATGGGATTGTTGATGATGATGGTGTTAATGGTGATAATAGGAAGCAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGACGGCAAGGGTGACAGAACGTTGGGAGAAATTGCTGGGAATTTGAATATATCTAGGGAAATGGTTAGAAAGCACGAAGTCAAGGCTCTTATGAAGCTCAACCATTCAGCTCGATTGGATTATCTTCGCCGTTATGTTGTATAA 1560 0.3942 MGVVTVSGSASRTPLGFNTKFSTHRLKRPLIVAFKGDKHNDSALVATQEKIPVPVETAKKTQKKRIGKSNKLPKRESSPSSMDVDYNEAAAMLENIYKLSPASDTGNAECIDDKIKRVSRRGKKVVDESEEKELKGDRVVRRQNKNKKAKRLTLDQRISLKNNKRGDEVIPTRKKRNFRNRIEKIEELIREYSVSNDFISMDWKRMRIPPVLSSSEHAWLFKLMQPMKLSIKLLSIFLALLQVKEDLQKELAREPADGELADATNMSITQVKKAIDVGQAARNKLIKHNLRLVLFVINKYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFIRVPFGLESVRAEIQKAKTELTFKLQRSPTEEEIIERVHISPERYHDIIKASKSILSLNSRHTTTQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLNHSARLDYLRRYVV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02277 519 Gene3D - 442 519 IPR036388 -
Gma04g02277 519 Gene3D - 226 274 IPR036388 -
Gma04g02277 519 Gene3D - 356 410 IPR036388 -
Gma04g02277 519 PRINTS Major sigma-70 factor signature 312 325 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 PRINTS Major sigma-70 factor signature 336 344 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 PRINTS Major sigma-70 factor signature 458 470 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 PRINTS Major sigma-70 factor signature 479 494 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 PRINTS Major sigma-70 factor signature 494 505 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 281 506 IPR014284 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 519 - -
Gma04g02277 519 Coils Coil 175 195 - -
Gma04g02277 519 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 193 352 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 Pfam Sigma-70 region 3 370 437 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 519 - -
Gma04g02277 519 Pfam Sigma-70 region 2 285 351 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 Gene3D - 275 353 - -
Gma04g02277 519 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 360 432 IPR013324 -
Gma04g02277 519 Coils Coil 364 384 - -
Gma04g02277 519 Pfam Sigma-70, region 4 454 505 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gma04g02277 519 MobiDBLite consensus disorder prediction 55 82 - -
Gma04g02277 519 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 424 511 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02277 Gma-Chr4 53233546 53236385 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02277 K03093 - gmx:100776369 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01605 14 41211313 41216443 Gma04g02277 04 53233546 53236385 PCT