Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00172 ATGGAGCTGTGCACTCGAACCTTCACAAGTTTCTTTCTTTTCAACCCTTCTTCCTCTTCAAACCCCCTGTTTCTTCGTGCTAATGCCAACGCTAAAACACCCTTCAAATTCAATTCCCTTAAACTCTCATCTTTCCCCCCTCATATTCACCTCTTCCAACCCTTTCTCTCTCCTCACACTTCTTCTCCCTTCACACTCTCAGCTGcttctgcttcttcttcttcttcttcttcttcAGTTGCAGTTGGCACAGAACAGGACCGTCTTCCAGCAGAATTGAATGTCACTGAAACAGCGGAACCCAATTCCAGAgttagattgcatgtggaggtgccatcattggtatgtgaggattgttacaagagggtcatagcagagtttatgaagcaagcaaagatccctggatttcgccctggaaagaaagttccagaaagcattcttattagttatgttgggagtcaaaatgttcagaaggctactattgaatctatattgaggaggacactctcacatgctatgacatcggttactggaagggctttgcaggactcggtacgaatagtgactaagttttctgagatggaggagacatattcttctcttgggtctcttagatatgatgtccttgttgatattgcaccagaaatcaaatggattcccgataataatgcatacaaaaatttaaagattgttgttgagatagatagtgatatagatgctcacacagcatctgaacaagaatttagaaggcgctataaatccattggtgctctgaaagtggttactgacagagggctacaggttggagatgttgttgtccttgacatctcagcaacaaccattgatcaagatgaatcaaatgttaaaagtattccttctgctgaaagtaaaggctttaattttgatacagaatatggtgaaaaagtattaccgggtttccttgattgtataattggaattcaacaaggtgaatcaaagtcttttcctcttgtatttcctgaaacatggaaccaagaaaatcttcgaggtgttcatgctcagtttactGTTGAATGCAAAGAACTTTTTTACAGAGATTTACCTGAGCTGGATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAGGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAGAACAAGCCACTGATAATGCTATCTTAGATCAGGTTTCTAAGATTGTACAAGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGAAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGGCAAAAATGAAACTAAATGAGCAGCAGCTGGCGACTCTGTCAAGTTCAAAGGCTGTGAACGAATTTCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTATATAACTAAATGA 1638 0.2234 MELCTRTFTSFFLFNPSSSSNPLFLRANANAKTPFKFNSLKLSSFPPHIHLFQPFLSPHTSSPFTLSAASASSSSSSSSVAVGTEQDRLPAELNVTETAEPNSRVRLHVEVPSLVCEDCYKRVIAEFMKQAKIPGFRPGKKVPESILISYVGSQNVQKATIESILRRTLSHAMTSVTGRALQDSVRIVTKFSEMEETYSSLGSLRYDVLVDIAPEIKWIPDNNAYKNLKIVVEIDSDIDAHTASEQEFRRRYKSIGALKVVTDRGLQVGDVVVLDISATTIDQDESNVKSIPSAESKGFNFDTEYGEKVLPGFLDCIIGIQQGESKSFPLVFPETWNQENLRGVHAQFTVECKELFYRDLPELDDSIADKLLPGCTTVEQVKDLLLQKCQEVEQTAREQATDNAILDQVSKIVQVDIPQSLFEEQGRQLYGANLLEIQAKMKLNEQQLATLSSSKAVNEFLEHQKENITNLIKQSLAVGDIYRRENLQFATEDLVKEVENSIAEFKRQNQEYDEERVKGQVQEILEGAKVLEWLREHAEVQYITK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00172 545 Hamap Trigger factor [tig]. 93 541 IPR005215 GO:0015031
Gma14g00172 545 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 77 544 IPR005215 GO:0015031
Gma14g00172 545 Pfam Bacterial trigger factor protein (TF) C-terminus 377 534 IPR008880 GO:0006457|GO:0015031
Gma14g00172 545 Gene3D - 91 216 IPR036611 GO:0006457|GO:0015031
Gma14g00172 545 Pfam Bacterial trigger factor protein (TF) 94 233 IPR008881 GO:0006457|GO:0015031
Gma14g00172 545 Gene3D - 254 361 IPR046357 GO:0003755
Gma14g00172 545 SUPERFAMILY Trigger factor ribosome-binding domain 93 220 IPR036611 GO:0006457|GO:0015031
Gma14g00172 545 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 77 544 - -
Gma14g00172 545 Gene3D - 224 540 IPR037041 GO:0006457|GO:0015031
Gma14g00172 545 Coils Coil 495 515 - -
Gma14g00172 545 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 363 542 IPR027304 -
Gma14g00172 545 SUPERFAMILY FKBP-like 259 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00172 Gma-Chr14 1385134 1391228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00172 K03545 - gmx:100812597 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00172 14 1385134 1391228 Gma14g00172 14 1385134 1391228 ECH
Gma14g00172 14 1385134 1391228 Gma02g02768 02 53295351 53301360 GST