Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03284 ATGGTTCTGGCGGAGTTAGGTGGGAGCATTTCGCGTGCTCTCCAGCTGATGAGCAATGCGACAGTAATCGACGAGAAGGTGCTCAACGATTGCCTCAACGACATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTCCGCGACATGCAGACCAACATCAAGAACATTGTCAACCTCGACGATCTCGCTGCCGGTCACAACAAACGCAGGATCATCCAACAAGCTGTGTTTAACGAACTCTGCAAAATTCTGGACCCTGGGAAGCCCTCTTTCACTCCCAAAAAGGGCAAAACAAGTGTTGTCATGTTTGTTGGTTTGCAAGgttctggaaaaaccacaacgtgtacaaagtatgcatattatcatcagaagaaaggctggaagccggctctagtatgtgcagatacattcagagctggtgcatttgatcaATTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCCGATCCGGTAAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGAGGCACAAACAAGAAGCTTCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAAGCCCAAGCATTTAAGCAGAGTGTTGCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGACGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTCTATTAGGAATGGGCGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTCGTTCCTATGGATCAACAACCTGAACTGCTTCAGAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTTTTTTCTATGCTTCCCGGATTTAGTGCTGAATTAATGCCAAAAGGCCGTGAGAAAGAAAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCCAAGCTCATGAATGAGTCACGCATGATGCGGATAGCTCGAGGTGCAGGTCGTCAGATTAGGGAAGTGATGGAGATGTTGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAAGGTGATATGAGTGCCCTATCCCGAAATATGAATGCCCAACACATGAGCAAAGTCCTTCCTCCTCAGATGCTGAAGCAAATTGGTGGCATGGGTGGGTTACAAAACTTGATGAAGCAGATGGGATCCGCCAAAGACATGATGGGAATGGGAGGAATGTTTGGTGGTGGTGGTGGTGGTGATTAG 1503 0.4085 MVLAELGGSISRALQLMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEASLFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGAGRQIREVMEMLEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGMFGGGGGGD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03284 500 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Gma13g03284 500 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Gma13g03284 500 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Gma13g03284 500 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Gma13g03284 500 CDD SRP54_G 102 294 - -
Gma13g03284 500 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Gma13g03284 500 Gene3D - 311 452 IPR036891 GO:0006614|GO:0008312|GO:0048500
Gma13g03284 500 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Gma13g03284 500 SMART AAA_5 100 277 IPR003593 -
Gma13g03284 500 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 497 - -
Gma13g03284 500 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Gma13g03284 500 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Gma13g03284 500 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Gma13g03284 500 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 497 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Gma13g03284 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Gma13g03284 500 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Gma13g03284 500 Gene3D - 91 285 IPR027417 -
Gma13g03284 500 Gene3D - 5 306 IPR042101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03284 Gma-Chr13 46789913 46794278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03284 K03106 - gmx:100789217 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03284 13 46789913 46794278 Gma13g03284 13 46789913 46794278 ECH
Gma13g03284 13 46789913 46794278 Gma15g00067 15 572116 575784 GST
Gma13g03284 13 46789913 46794278 Gma07g00272 07 2386512 2389818 PCT
Gma13g03284 13 46789913 46794278 Gma08g01958 08 17547771 17550991 PCT
Gma07g00272 07 2386512 2389818 Gma13g03284 13 46789913 46794278 PCT
Gma08g01958 08 17547771 17550991 Gma13g03284 13 46789913 46794278 PCT