Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01958 ATGGTTCTCGCGGAGTTAGGTGGTAGCATTTCGCGTGCTCTTCAGCAGATGAGCAATGCGACGATCATCGACGAGAAAGTCCTCAACGATTGCCTCAACGACATCACTCGCGCGCTTCTCCAATCCGATGTTCAATTCAAGCTCGTTCGCGACATGCAGACCAACATCAAGAGCATCGTCAACCTCGACGACCTTGCCGCAGGTCACAACAAGCGCAGGATCATCCAGCAGGCCGTCTTCAACGAGCTCTGCAAGATCCTCGATCCCGGAAAACCCTCTTTTACCCTCAAAAAGGGCAAACCCAGCGTCGTCATGTTCGTTGGCTTGCAAGGATCTGGTAAAACGACGACGTGTACAAAATACGCGTTTTATCATCAGAAGAAAGGTTGGAAGCCTGCTCTGGTGTGTGCGGATACGTTCAGAGCTGGTGCTTTTGATCAGTTGAAGCAAAATGCTACTAAAGCGAAGATCCCTTTCTATGGAAGCTATATGGAATCAGATCCTGTGAAAATTGCTGTGGAAGGGGTTGAACGATTCAAGCAAGAAAACTGTGATCTTATAATTGTTGACACTAGTGGGCGGCACAAACAGGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAACCAGATCTTGTCATATTTGTTATGGATAGCAGTATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTCATTGTCACTAAAATGGATGGCCACGCAAAGGGTGGTGGTGCTCTTAGTGCTGTAGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACACATGGACGAATTTGAAGTTTTTGACGTTAAACCATTTGTCAGTCGTCTATTAGGCATGGGAGACTGGTCTGGGTTCATGGATAAAATTCATGAAGTTGTTCCTATGGATCAACAGCCTGAACTGCTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGCCCCATCAGCCAGGTCTTTTCTATGCTACCTGGATTTAGTGCTGAATTAATGCCAAAAGGTCGTGAAAAGGAAAGCCAGGCAAAAATTAAACGTTACATGACAATGATGGATTCGATGACAAACGAAGAGTTGGATAGTTCAAACCCAAAGCTCATTAATGAGTCCCGTATGATGCGAATAGCTCGAGGTTCTGGTCGTCCAGTTAGGGAAGTAATGGAAATGTTAGAAGAGTACAAACGTCTTGCAAAGATTTGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAGGGTGAAATGAGCGCCTTATCCCGAAATATGAATGCTCAGCACATGAGCAAAGTCCTCCCTCCACAGATGCTAAAGCAAATCGGAGGCATGGGTGGGTTACAAAGCTTGATGAAGCAGATGGGATCTGCTAAAGATATGATGGGAATGTTTGGTGGTGGTGATAATTAG 1488 0.4496 MVLAELGGSISRALQQMSNATIIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKSIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTLKKGKPSVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKQENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLINESRMMRIARGSGRPVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSAKDMMGMFGGGDN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01958 495 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Gma08g01958 495 Gene3D - 5 306 IPR042101 -
Gma08g01958 495 Pfam SRP54-type protein, GTPase domain 101 296 IPR000897 GO:0005525|GO:0006614
Gma08g01958 495 SMART AAA_5 100 277 IPR003593 -
Gma08g01958 495 Gene3D - 311 452 IPR036891 GO:0006614|GO:0008312|GO:0048500
Gma08g01958 495 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 494 - -
Gma08g01958 495 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Gma08g01958 495 CDD SRP54_G 102 294 - -
Gma08g01958 495 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Gma08g01958 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Gma08g01958 495 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Gma08g01958 495 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Gma08g01958 495 Gene3D - 91 285 IPR027417 -
Gma08g01958 495 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Gma08g01958 495 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Gma08g01958 495 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Gma08g01958 495 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Gma08g01958 495 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 494 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01958 Gma-Chr8 17547771 17550991 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01958 K03106 - gmx:100792778 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01958 08 17547771 17550991 Gma08g01958 08 17547771 17550991 ECH
Gma07g00272 07 2386512 2389818 Gma08g01958 08 17547771 17550991 GST
Gma13g03284 13 46789913 46794278 Gma08g01958 08 17547771 17550991 PCT
Gma15g00067 15 572116 575784 Gma08g01958 08 17547771 17550991 PCT
Gma08g01958 08 17547771 17550991 Gma13g03284 13 46789913 46794278 PCT
Gma08g01958 08 17547771 17550991 Gma15g00067 15 572116 575784 PCT