Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03275 ATGTTATCTTCCTTTTTTCTTTGGCTTCTGCTATTCTCTCCATTATTTTCTCATGTTTTAGGGGATAAAGCATTTACAGGAACATATGGAGTAAAATATGGCAGGATAGCTGACAACTTACCTCCCCAAGAAAGCGTGGTTACCTTACTCAAAGCAGCAAAAATTAAGAACATTAGGATATATGATGCTGGTCATAAACTCCTCCGTGCCTTCAAAGGGTCTGGCATTGAAATTGTGGTTGGTCTTGGCAATGAATTTCTCAAGGACATGAGTGTGGGGGAGGATAAAGCCATGAGTTGGGTTAAAGAAAACGTTCAGCAATTTCTTCCAGGTACCAAAATTCGCGGAATTGCGTTGGGAAATGAAATCTTGGGAGGCACGGATATGGAACTCTGGCAAGTTTTGCTCCCTGCAGCAAAGAATGTTTACAATGCCCTTAGTAAGCTTGATCTAGCAAAAGATGTTCAGGTGTCAAGTCCACATTCTGAGGCTGAAGATGTCCTTCCATATATGAAGCCTCTCTTACAATTCTTCTCACAAATTGGCACTCCTTTTTTCATTAATGCATATCCTTTCCTTGCCTATAAGAATGATCCACAACATATTGACCTTAACTATGCCCTCTTCCTAAAAAATCCTGTTATTTATGATGCAAAGACTAAGCTGCATTATAGTAACATGTTTGAGGCTCAGGTTGATGCAGCTTATGCTGCCTTGGAGCAGGTTGGGTTTGACAAGATGGATGTTATTGTTTCTGAGACTGGTTGGGCTTCTCATGGGGATGGTAATGAAGCTGGAGCAACAATAAAAAATGCAAGGACTTATAATGGTAATTTACGCAAGCGTTTACTAAAGAAGAAAGGGACCCCTTATAGGCCAAAAAAAGTGGTGAAGCCTGGCCCAATGTCCGAGAGAAACTTTGGATTGTTTAAGGCTGATGGAAGCATTGCATATGATATTGGCTTCACTGGACTTGTACCTTCTTCATCAACTTCATCTTTCCTTTCCTTCAAGGGTATTGGATCCTCGTCCATGATGGCTTTTACGAGTTTTGCTGCTTTTCTTTTTATAGCATTGTAA 1080 0.4046 MLSSFFLWLLLFSPLFSHVLGDKAFTGTYGVKYGRIADNLPPQESVVTLLKAAKIKNIRIYDAGHKLLRAFKGSGIEIVVGLGNEFLKDMSVGEDKAMSWVKENVQQFLPGTKIRGIALGNEILGGTDMELWQVLLPAAKNVYNALSKLDLAKDVQVSSPHSEAEDVLPYMKPLLQFFSQIGTPFFINAYPFLAYKNDPQHIDLNYALFLKNPVIYDAKTKLHYSNMFEAQVDAAYAALEQVGFDKMDVIVSETGWASHGDGNEAGATIKNARTYNGNLRKRLLKKKGTPYRPKKVVKPGPMSERNFGLFKADGSIAYDIGFTGLVPSSSTSSFLSFKGIGSSSMMAFTSFAAFLFIAL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03275 359 SUPERFAMILY (Trans)glycosidases 29 321 IPR017853 -
Gma13g03275 359 Pfam Glycosyl hydrolases family 17 30 322 IPR000490 GO:0004553|GO:0005975
Gma13g03275 359 Gene3D Glycosidases 28 325 - -
Gma13g03275 359 PANTHER GLYCOSYL HYDROLASE SUPERFAMILY PROTEIN 6 355 - -
Gma13g03275 359 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 355 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03275 Gma-Chr13 46728061 46729671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03275 24 331 Glycoside Hydrolase AT3G15800 66.567 2.86e-157 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03275 - - gmx:100815468 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03275 13 46728061 46729671 Gma13g03275 13 46728061 46729671 ECH
Gma13g03275 13 46728061 46729671 Gma15g00076 15 645109 646819 GST
Gma13g03275 13 46728061 46729671 Gma07g00283 07 2469037 2471778 PCT
Gma13g03275 13 46728061 46729671 Gma08g01946 08 17440504 17442745 PCT
Gma07g00283 07 2469037 2471778 Gma13g03275 13 46728061 46729671 PCT
Gma08g01946 08 17440504 17442745 Gma13g03275 13 46728061 46729671 PCT