Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03074 ATGATGAGGCAAGAAGTTGTATTTTGGCATCCCCGTGGCTTCAAGAAGAGAATCTCAATGGAGGCCCAGGAGCTGAAGCGCGTGTTCCAGATGTTCGACCGCAACGGCGACGGGAGAATAACGAAGAAGGAGCTGAACGACTCGCTGGAGAACCTGGGCATCTTCATCTCTGACAAGGACCTGAGCCAAATGATCCAGAGGATCGACGTCAACGGCGACGGTTGCGTGGACATGGACGAGTTTGGGGAGCTGTATCAGACCATAATGGACGAGCGCGACAATGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGACCAGAACGCCGACGGCTTCATCACCGTCGACGAGTTGAGGACCGTCTTGTCCTCCCTCGGCTTGAAGCAAGGAAGAACCGTCCAAGACTGCAAGGCCATGATCTCCAAGGTCGATGTTGATGGAGATGGCATGGTCGATTACAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGATTCACTGCTCTCACTTAA 510 0.5333 MMRQEVVFWHPRGFKKRISMEAQELKRVFQMFDRNGDGRITKKELNDSLENLGIFISDKDLSQMIQRIDVNGDGCVDMDEFGELYQTIMDERDNEEDMREAFNVFDQNADGFITVDELRTVLSSLGLKQGRTVQDCKAMISKVDVDGDGMVDYKEFKQMMKGGGFTALT 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03074 169 ProSiteProfiles EF-hand calcium-binding domain profile. 131 166 IPR002048 GO:0005509
Gma13g03074 169 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Gma13g03074 169 SMART efh_1 24 52 IPR002048 GO:0005509
Gma13g03074 169 SMART efh_1 60 88 IPR002048 GO:0005509
Gma13g03074 169 SMART efh_1 135 163 IPR002048 GO:0005509
Gma13g03074 169 SMART efh_1 97 125 IPR002048 GO:0005509
Gma13g03074 169 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 20 168 - -
Gma13g03074 169 SUPERFAMILY EF-hand 21 162 IPR011992 -
Gma13g03074 169 Gene3D - 87 163 - -
Gma13g03074 169 ProSitePatterns EF-hand calcium-binding domain. 69 81 IPR018247 -
Gma13g03074 169 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Gma13g03074 169 Gene3D - 21 86 - -
Gma13g03074 169 PRINTS Parvalbumin signature 84 102 - -
Gma13g03074 169 PRINTS Parvalbumin signature 106 122 - -
Gma13g03074 169 PRINTS Parvalbumin signature 143 156 - -
Gma13g03074 169 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Gma13g03074 169 ProSiteProfiles EF-hand calcium-binding domain profile. 56 91 IPR002048 GO:0005509
Gma13g03074 169 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
Gma13g03074 169 CDD EFh 97 161 IPR002048 GO:0005509
Gma13g03074 169 Pfam EF-hand domain pair 23 86 IPR002048 GO:0005509
Gma13g03074 169 Pfam EF-hand domain pair 95 161 IPR002048 GO:0005509
Gma13g03074 169 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Gma13g03074 169 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 20 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03074 Gma-Chr13 45072624 45073693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03074 20 168 EF-hand Containing Proteins AT3G07490 80.537 2.78e-76 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03074 K13448 - gmx:100813656 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03074 13 45072624 45073693 Gma13g03074 13 45072624 45073693 ECH
Gma13g03074 13 45072624 45073693 Gma12g00464 12 3795684 3796559 PCT
Gma13g03074 13 45072624 45073693 Gma11g01165 11 9803554 9804474 PCT