Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01165 ATGGACCCTGCAGAGCTGAAGCGCGTTTTCCAATTGTTCGACCGCAACGGTGACGGGAGAATCTCATTGAAGGAGCTGAGCGATTCGTTGGAGAATCTAGGCATCTTGATCCCGGACAAGGACCTTGCTCAGATGATCGAGAGAATCGACATGAACGGAGACGGTTGCATAGACGTGGACGAGTTTGGGGACTTGTATGAGTCCATCATGGAGGAGCCTGATGAGGAGGAGGACATGAGGGAGGCCTTTAACGTCTTTGACCAGAACCGCGACGGTTTCATCACCGTCGAGGAACTAGGGACAGTGCTGGCCTCCCTCGGCCTCAAACAAGGGAGGACCCTTGACGAGTGCAAGAAGATGATCATGAAAGTCGACGTTGATGGAGATGGCATGGTTAATTACAAGGAGTTCAGGCAAATGATGAAGGGAGGAGGCTTCACTGTCCTTAGTTAG 453 0.5188 MDPAELKRVFQLFDRNGDGRISLKELSDSLENLGILIPDKDLAQMIERIDMNGDGCIDVDEFGDLYESIMEEPDEEEDMREAFNVFDQNRDGFITVEELGTVLASLGLKQGRTLDECKKMIMKVDVDGDGMVNYKEFRQMMKGGGFTVLS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01165 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Gma11g01165 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Gma11g01165 150 SUPERFAMILY EF-hand 4 143 IPR011992 -
Gma11g01165 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Gma11g01165 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Gma11g01165 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Gma11g01165 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Gma11g01165 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Gma11g01165 150 Gene3D - 2 68 - -
Gma11g01165 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Gma11g01165 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Gma11g01165 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 149 - -
Gma11g01165 150 Gene3D - 69 144 - -
Gma11g01165 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Gma11g01165 150 PRINTS Parvalbumin signature 65 83 - -
Gma11g01165 150 PRINTS Parvalbumin signature 87 103 - -
Gma11g01165 150 PRINTS Parvalbumin signature 124 137 - -
Gma11g01165 150 PANTHER CALMODULIN-LIKE PROTEIN 3 1 149 - -
Gma11g01165 150 CDD EFh 82 142 IPR002048 GO:0005509
Gma11g01165 150 SMART efh_1 116 144 IPR002048 GO:0005509
Gma11g01165 150 SMART efh_1 78 106 IPR002048 GO:0005509
Gma11g01165 150 SMART efh_1 41 69 IPR002048 GO:0005509
Gma11g01165 150 SMART efh_1 5 33 IPR002048 GO:0005509
Gma11g01165 150 CDD EFh 5 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01165 Gma-Chr11 9803554 9804474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01165 1 147 EF-hand Containing Proteins AT2G43290 73.026 3.23e-77 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01165 K13448 - gmx:100781506 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01165 11 9803554 9804474 Gma11g01165 11 9803554 9804474 ECH
Gma12g00464 12 3795684 3796559 Gma11g01165 11 9803554 9804474 GST
Gma13g03074 13 45072624 45073693 Gma11g01165 11 9803554 9804474 PCT