Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02975 ATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGGTGA 648 0.4306 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAGIKINNQLDHATAGEVAQKSACCG 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02975 215 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Gma13g02975 215 CDD Rab8_Rab10_Rab13_like 13 180 - -
Gma13g02975 215 SMART arf_sub_2 1 181 - -
Gma13g02975 215 PRINTS Transforming protein P21 ras signature 16 37 - -
Gma13g02975 215 PRINTS Transforming protein P21 ras signature 39 55 - -
Gma13g02975 215 PRINTS Transforming protein P21 ras signature 57 79 - -
Gma13g02975 215 PRINTS Transforming protein P21 ras signature 119 132 - -
Gma13g02975 215 PRINTS Transforming protein P21 ras signature 155 177 - -
Gma13g02975 215 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Gma13g02975 215 Gene3D - 9 214 IPR027417 -
Gma13g02975 215 SMART rab_sub_5 16 180 - -
Gma13g02975 215 SMART ran_sub_2 21 213 - -
Gma13g02975 215 ProSiteProfiles small GTPase Rab1 family profile. 11 214 - -
Gma13g02975 215 SMART ras_sub_4 17 180 - -
Gma13g02975 215 ProSiteProfiles small GTPase Ras family profile. 6 208 IPR001806 GO:0003924|GO:0005525
Gma13g02975 215 PANTHER LD44762P 1 215 - -
Gma13g02975 215 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Gma13g02975 215 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Gma13g02975 215 PANTHER - 1 215 - -
Gma13g02975 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 193 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02975 Gma-Chr13 44295098 44299014 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02975 K07901 - gmx:100780673 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02975 13 44295098 44299014 Gma13g02975 13 44295098 44299014 ECH
Gma13g02975 13 44295098 44299014 Gma15g00391 15 3252956 3256466 ECH
Gma13g02975 13 44295098 44299014 Gma15g00391 15 3252956 3256466 GST
Gma13g02975 13 44295098 44299014 Gma12g00583 12 4892303 4896371 PCT
Gma13g02975 13 44295098 44299014 Gma11g01289 11 11002441 11006523 PCT
Gma12g00583 12 4892303 4896371 Gma13g02975 13 44295098 44299014 PCT
Gma11g01289 11 11002441 11006523 Gma13g02975 13 44295098 44299014 PCT