Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00583 atggctgctccaccggcaagggctcgtgccgattacgattatctcataaagcttctcttgatcggtgacagcgGTGTTGGGAAAAGTTGCCTCCTTCTGCGTTTCTCCGATGGTTCTTTCACCACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCTTGATGGCAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGGACAATTACAACTGCTTACTACCGTGGTGCTATGGGCATATTGCTAGTCTATGATGTTACAGATGAAGCATCATTTAACAATATCAGGAATTGGATTCGCAATATTGAGCAACATGCTTCAGACAATGTTAACAAAATACTGGTGGGGAACAAAGCTGATATGGATGAAAGCAAAAGGGCCGTGCCTACGTCCAAGGGCCAAGCACTGGCTGATGAGTATGGGATCAAATTCTTTGAAACTAGTGCAAAGACAAATCTAAACGTGGAGGAAGTTTTCTTCTCAATAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCTGCACAAAAATCGGCTTGTTGTGGTTGA 645 0.386 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDTKAEPSTIKINQDQSGGAGQAAQKSACCG 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00583 214 SMART rab_sub_5 16 180 - -
Gma12g00583 214 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Gma12g00583 214 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Gma12g00583 214 ProSiteProfiles small GTPase Rab1 family profile. 11 213 - -
Gma12g00583 214 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Gma12g00583 214 CDD Rab8_Rab10_Rab13_like 13 180 - -
Gma12g00583 214 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Gma12g00583 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 190 IPR027417 -
Gma12g00583 214 PANTHER BNAA07G37610D PROTEIN 1 213 - -
Gma12g00583 214 Gene3D - 9 213 IPR027417 -
Gma12g00583 214 MobiDBLite consensus disorder prediction 189 206 - -
Gma12g00583 214 PRINTS Transforming protein P21 ras signature 16 37 - -
Gma12g00583 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Gma12g00583 214 PRINTS Transforming protein P21 ras signature 57 79 - -
Gma12g00583 214 PRINTS Transforming protein P21 ras signature 119 132 - -
Gma12g00583 214 PRINTS Transforming protein P21 ras signature 155 177 - -
Gma12g00583 214 ProSiteProfiles small GTPase Ras family profile. 6 214 IPR001806 GO:0003924|GO:0005525
Gma12g00583 214 SMART ras_sub_4 17 180 - -
Gma12g00583 214 MobiDBLite consensus disorder prediction 185 214 - -
Gma12g00583 214 PANTHER LD44762P 1 213 - -
Gma12g00583 214 SMART arf_sub_2 1 181 - -
Gma12g00583 214 SMART ran_sub_2 21 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00583 Gma-Chr12 4892303 4896371 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00583 K07901 - gmx:100779203 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00583 12 4892303 4896371 Gma12g00583 12 4892303 4896371 ECH
Gma11g01289 11 11002441 11006523 Gma12g00583 12 4892303 4896371 ECH
Gma12g00583 12 4892303 4896371 Gma11g01289 11 11002441 11006523 GST
Gma13g02975 13 44295098 44299014 Gma12g00583 12 4892303 4896371 PCT
Gma15g00391 15 3252956 3256466 Gma12g00583 12 4892303 4896371 PCT
Gma12g00583 12 4892303 4896371 Gma13g02975 13 44295098 44299014 PCT
Gma12g00583 12 4892303 4896371 Gma15g00391 15 3252956 3256466 PCT