Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02869 ATGCCATTGTTAACTTCCTCTTTGTTCAACATGGTTCCTCTCTTCTCTCTTCTTTTGTTCTCACTCATGATTCGTTATAGTACTTCTCAGGATCCACCTTCACCTGGTTACTACCCTAGTTCCAAAATTAGTCCCGTTAGCTTTGGTGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAAACTAGACCAAGACTCATTAACAATCTGGCTTGACTCTTACTCAGGGAGTGGATTCAAGTCACTTCACTCTTATCGGTCTGGATACTTTGGTGCTGCGATTAAGCTTCAACCAGGTTACACTGCAGGAGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCAGGACACCATGATGAAATAGACATTGAGTTCCTTGGTACCACGCCGGATAAGCCATATGTCTTGCAGACAAACGTATACGTCAGAGGAAGTGGAGATGGGAATATTATAGGGAGAGAGATGAGGATTCACCTTTGGTTCGACCCAACACAAGATTTTCACAACTATGCTATTCTGTGGGAACCCAGTGAGATCATATTTTTAGTGGATGATGTCCCAATAAGGAGCTATCCTAGGAAGAGTGATGCCACGTTCCCCTCAAGAGAAATGTATGTGTACGGATCAATATGGGATGCATCTTCATGGGCTACAGAGGGAGGAAAATACAAAGCTGATTATAATTACCAACCCTTCTTTGGTAGATACAAAAACTTCAAAATACAAGGTTGTACCACTGAAGCTTCAACCTCATGCCAGCCACCATCTCCCTCACCACCAGGCTATGGCAGCCTAAGCCCTCAGCAACTTTCTGCAATGCAATGGGTCCAAAACAACTACTTGGTCTATGACTATTGCCATGATCCTGGAAGAGACCATACACTTACTCCAGAATGCTAA 909 0.4334 MPLLTSSLFNMVPLFSLLLFSLMIRYSTSQDPPSPGYYPSSKISPVSFGEGFRNLWGPQHQKLDQDSLTIWLDSYSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDYPGHHDEIDIEFLGTTPDKPYVLQTNVYVRGSGDGNIIGREMRIHLWFDPTQDFHNYAILWEPSEIIFLVDDVPIRSYPRKSDATFPSREMYVYGSIWDASSWATEGGKYKADYNYQPFFGRYKNFKIQGCTTEASTSCQPPSPSPPGYGSLSPQQLSAMQWVQNNYLVYDYCHDPGRDHTLTPEC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02869 302 PIRSF EndGlu_transf 10 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma13g02869 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 239 IPR000757 GO:0004553|GO:0005975
Gma13g02869 302 Pfam Glycosyl hydrolases family 16 50 231 IPR000757 GO:0004553|GO:0005975
Gma13g02869 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gma13g02869 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
Gma13g02869 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 302 IPR044791 GO:0004553
Gma13g02869 302 Gene3D - 28 302 - -
Gma13g02869 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 13 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02869 Gma-Chr13 43211281 43213461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02869 15 302 Glycoside Hydrolase AT3G44990 65.979 3.61e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02869 K08235 - gmx:100796768 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02869 13 43211281 43213461 Gma13g02869 13 43211281 43213461 ECH
Gma13g02869 13 43211281 43213461 Gma12g01678 12 37171444 37173655 GST
Gma13g02869 13 43211281 43213461 Gma12g00714 12 6380421 6383359 PCT
Gma13g02869 13 43211281 43213461 Gma11g01589 11 17097226 17099616 PCT
Gma12g00714 12 6380421 6383359 Gma13g02869 13 43211281 43213461 PCT
Gma11g01589 11 17097226 17099616 Gma13g02869 13 43211281 43213461 PCT