Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01678 ATGCCATTGTTAACTTCCTCTTTGTTTCACATGGTTCCTCTCTTCTCTCTTCTTTTACTCTCACTCATGATTCGTTATGGTACTTCTCAGGGTCCACCTTCACCTGGCTACTACCCTAGTTCCAAAACTAATCCTGTTAGCTTTGATGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAAACTAGACCAAGACTCGTTAACAATCTGGCTTGACTCCTACTCAGGGAGTGGATTCAAGTCACTTCACTCTTATCGGTCTGGATACTTTGGTGCTGCGATTAAGCTTCAACCTGGCTACACTGCAGGAGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCAGGACACCATGATGAAATAGACATTGAGTTCCTTGGTACCACGCCAGATAAGCCATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAACATTATAGGGAGAGAGATGAGGTTTCACCTTTGGTTCGACCCAACACAAGATTTTCACAACTATGCTATTCTGTGGGAACCCAGTGAGATCATATTTTTAGTGGATGATGTCCCAATAAGGAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCACAAGAGAAATGTATGTGTACGGATCAATATGGGATGCATCTTCATGGGCTACAGAGGGAGGAAAATACAAAGCTGATTATAATTACCAACCCTTCTTTGGTAGATACAAAAACTTCAAAATACTAGGTTGTACCACTGAAGCCTCAACCTCATGCCAGCCACCATCTCCTTCACCATCAGGCTATGACAGCCTTAGTCCTCAGCAATTTGCTGCAATGCAATGGGTCCAAAACAACTACTTGGTCTATGACTATTGCCATGATCCTGGGAGAGACCATACACTTACTCCAGAATGCTAA 909 0.4334 MPLLTSSLFHMVPLFSLLLLSLMIRYGTSQGPPSPGYYPSSKTNPVSFDEGFRNLWGPQHQKLDQDSLTIWLDSYSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDYPGHHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTQDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPTREMYVYGSIWDASSWATEGGKYKADYNYQPFFGRYKNFKILGCTTEASTSCQPPSPSPSGYDSLSPQQFAAMQWVQNNYLVYDYCHDPGRDHTLTPEC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01678 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
Gma12g01678 302 Pfam Glycosyl hydrolases family 16 50 231 IPR000757 GO:0004553|GO:0005975
Gma12g01678 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gma12g01678 302 PIRSF EndGlu_transf 9 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma12g01678 302 Gene3D - 28 302 - -
Gma12g01678 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 302 IPR044791 GO:0004553
Gma12g01678 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 13 302 - -
Gma12g01678 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 239 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01678 Gma-Chr12 37171444 37173655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01678 12 302 Glycoside Hydrolase AT3G44990 68.041 9.69e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01678 K08235 - gmx:100786503 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01678 12 37171444 37173655 Gma12g01678 12 37171444 37173655 ECH
Gma13g02869 13 43211281 43213461 Gma12g01678 12 37171444 37173655 GST
Gma12g01678 12 37171444 37173655 Gma12g00714 12 6380421 6383359 PCT
Gma12g01678 12 37171444 37173655 Gma11g01589 11 17097226 17099616 PCT
Gma12g00714 12 6380421 6383359 Gma12g01678 12 37171444 37173655 PCT
Gma11g01589 11 17097226 17099616 Gma12g01678 12 37171444 37173655 PCT