Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02538 ATGGTGACAAGGGTCGAGAAAGGGGGAAAATCCTTTGGTTTGGGGTGTGATCCTGTTGTGGGATCATTGATTCCTGCAAAAAAGAAGGATTACAAAGTCACCAATCGCCTCCAAGAGGGGAAACGCCCTTTGTACGCCATCGTTTTCAATACCATCGACTTTCGTTATCGCGACATTTTCGCTACAGTTGGGGGCAACAAGGTTACTGTTTATCAATGCCTTGATGAAGGGGATATTGCTGTTTTGCAATCTTATGCGGATGAGGATAAGAATGAGTCTTTTTACACCGTGGGTTGGGCATGCAATGTTGACGGGACCCCACTTGTTGTGGCTGGAGGACTCAATGGGGTAATCCGAGTCATTGATGCTGGCAGTGAGAAGATACATAAGAGTTTTGTTGGCCATGGAGACTCCATAAATGAAGTCAAAGCTCAAATATTAAATCCATCACTCGTGGTATCGGCAAGCAAAGATGAATCTATTCGGTTATGGAATGCTCATACTGGAATATGCATTTTGATATTTGCTGGAGGCGGGGGACATCGTAATGAAGTCTTAAGTGTTGATTTTCATCCATCGGATATGTATCGTATTTGTAGTTGTGGCATGGATAGTACTGTAAAAATATGGTCTATGAAGGAGTTCTGGACATATGTAGAAAAATCATCCACATGGACAGATCTTCCTTCCAAGTTTCCAACAAAATTTGTCCAGTTTCCTGTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAGAGTGTTGATAATGAAATTATCTTGTGGGAACCTAAAGTGAACGAACAAACTCCAGGGAAGGGTGTAGTTGATGTTCTTCATAAATACCCTATTCCCGATTGCAATATCTGGTTCATCAAGTTTTCTTGTGACTTCCATTTCAACATAGTTACAGTGGGTAACAGGGAAGGGAAGATTTTTGTTTGGGAATTACAGTCAAGTCCTCCCGTACTTGCTGCAAAGTTGTCACATCCTCAATCAAAATCCCCAATCAGGCAGACTGCAACATCCTTTGATGGAAGTACTATATTGAGTTGCTGTGAGGATGGGACAATATGGCGTTGGGATGTTTCAAAACCCTCAACCTCAACCTCAACCGCAGCCTAA 1158 0.4197 MVTRVEKGGKSFGLGCDPVVGSLIPAKKKDYKVTNRLQEGKRPLYAIVFNTIDFRYRDIFATVGGNKVTVYQCLDEGDIAVLQSYADEDKNESFYTVGWACNVDGTPLVVAGGLNGVIRVIDAGSEKIHKSFVGHGDSINEVKAQILNPSLVVSASKDESIRLWNAHTGICILIFAGGGGHRNEVLSVDFHPSDMYRICSCGMDSTVKIWSMKEFWTYVEKSSTWTDLPSKFPTKFVQFPVYTASVHINYVDCNRWLGDFILSKSVDNEIILWEPKVNEQTPGKGVVDVLHKYPIPDCNIWFIKFSCDFHFNIVTVGNREGKIFVWELQSSPPVLAAKLSHPQSKSPIRQTATSFDGSTILSCCEDGTIWRWDVSKPSTSTSTAA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02538 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 174 IPR001680 GO:0005515
Gma13g02538 385 Pfam WD domain, G-beta repeat 130 165 IPR001680 GO:0005515
Gma13g02538 385 Pfam WD domain, G-beta repeat 179 211 IPR001680 GO:0005515
Gma13g02538 385 SUPERFAMILY WD40 repeat-like 30 376 IPR036322 GO:0005515
Gma13g02538 385 ProSitePatterns Trp-Asp (WD) repeats signature. 152 166 IPR019775 -
Gma13g02538 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 213 - -
Gma13g02538 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 213 IPR001680 GO:0005515
Gma13g02538 385 SMART WD40_4 332 373 IPR001680 GO:0005515
Gma13g02538 385 SMART WD40_4 286 327 IPR001680 GO:0005515
Gma13g02538 385 SMART WD40_4 125 165 IPR001680 GO:0005515
Gma13g02538 385 SMART WD40_4 237 274 IPR001680 GO:0005515
Gma13g02538 385 SMART WD40_4 78 122 IPR001680 GO:0005515
Gma13g02538 385 SMART WD40_4 168 211 IPR001680 GO:0005515
Gma13g02538 385 PANTHER BNAA05G20190D PROTEIN 13 376 - -
Gma13g02538 385 PANTHER POLYCOMB PROTEIN 13 376 - -
Gma13g02538 385 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Gma13g02538 385 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Gma13g02538 385 PRINTS G protein beta WD-40 repeat signature 360 374 IPR020472 -
Gma13g02538 385 Gene3D - 26 374 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02538 Gma-Chr13 40255118 40259887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02538 K11462 - gmx:100785120 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02538 13 40255118 40259887 Gma13g02538 13 40255118 40259887 ECH
Gma13g02538 13 40255118 40259887 Gma12g02019 12 40841473 40845825 GST