Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02019 ATGAAGAAGGATTACAGAGTCACCAATCGCCTCCAAGAGGGAAAACGTCCTCTATACGCCATCGTTTTCAACGTCCTTGACTCTCGCTACCTTGACGTTTTCGCCACTGTTGGGGGCAACAGGGTTACTGTTTATCAATGCCTTAAAGAAGGGGTTATTGCAGTTTTGCAATCTTATGTGGATGAGGATAAGGATGAGTCTTTTTACACTGTGGGTTGGGCATGCAATGTTAATGGGACCCCACTTGTTGTGACTGGAGGACTTAATGGGGTAATTCGAGTCATTGATGCTGGCAGTGAGAAGATACACAGTATTTTTGTTGGCCATGGAGACTCCATAAATGAAGTCAAAGCTCAAATATTAAATCCATCACTTGTGGTATCTGCAAGCAAAGATGAATCTATCCGGTTATGGAATGCTCATACTGGAATATACATTTTGATATTTGCTGGAGCCAGGGGACATCGAAATGAAGTCTTAAGTGTTGATTTTCATCCATCGGATATGTATTGTATTTGTAGTTGTGGCATGGATAATACTGTTAAAATTTGGTCTATGAAGGGTAATATATTTATGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAGAGTGTTGATAATGAAATGATCTTGTGGGGACCTAAAGTGAAAGAACAAACTCCAGGGGAGGTAGAGCATTTGAAGCAACCAAAATTCCTTCTCCATACCTCTTTAAGTAAAATACTCATTTGGGTGGTGGCTTCCAAATACATCGTAAGCAAGACGCAAATAATCAACcTGGGACAAACTTGA 813 0.3985 MKKDYRVTNRLQEGKRPLYAIVFNVLDSRYLDVFATVGGNRVTVYQCLKEGVIAVLQSYVDEDKDESFYTVGWACNVNGTPLVVTGGLNGVIRVIDAGSEKIHSIFVGHGDSINEVKAQILNPSLVVSASKDESIRLWNAHTGIYILIFAGARGHRNEVLSVDFHPSDMYCICSCGMDNTVKIWSMKGNIFMHINYVDCNRWLGDFILSKSVDNEMILWGPKVKEQTPGEVEHLKQPKFLLHTSLSKILIWVVASKYIVSKTQIINLGQT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02019 270 PANTHER POLYCOMB PROTEIN 192 232 - -
Gma12g02019 270 Pfam WD domain, G-beta repeat 153 185 IPR001680 GO:0005515
Gma12g02019 270 Pfam WD domain, G-beta repeat 105 139 IPR001680 GO:0005515
Gma12g02019 270 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 187 IPR001680 GO:0005515
Gma12g02019 270 PANTHER POLYCOMB PROTEIN 2 188 - -
Gma12g02019 270 SUPERFAMILY WD40 repeat-like 8 260 IPR036322 GO:0005515
Gma12g02019 270 ProSitePatterns Trp-Asp (WD) repeats signature. 126 140 IPR019775 -
Gma12g02019 270 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 187 - -
Gma12g02019 270 SMART WD40_4 142 185 IPR001680 GO:0005515
Gma12g02019 270 SMART WD40_4 64 96 IPR001680 GO:0005515
Gma12g02019 270 SMART WD40_4 99 139 IPR001680 GO:0005515
Gma12g02019 270 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 148 IPR001680 GO:0005515
Gma12g02019 270 PANTHER BNAA05G20190D PROTEIN 2 188 - -
Gma12g02019 270 Gene3D - 2 265 IPR015943 GO:0005515
Gma12g02019 270 PANTHER BNAA05G20190D PROTEIN 192 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02019 Gma-Chr12 40841473 40845825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02019 K11462 - gmx:100785120 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02019 12 40841473 40845825 Gma12g02019 12 40841473 40845825 ECH
Gma13g02538 13 40255118 40259887 Gma12g02019 12 40841473 40845825 GST