Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02476 ATGCAACGTAACATGGCAATGAGCTTCTTCCAACGCAGGTTTTTCAGCCAGCAAAGGCGAACACAAATGGTGGCAAGGCGAGTGGTGGAGCCGTGTGATGTGTTCCTGAACCACAGGTGCATGGACACAAAGAAAACAGTGGCTACTTTGCTCTATGACCATTTGAAGAGACACGGCTTCAACCCTTTCTTGGACAACAAGAACATGAAGCCAGGCGACAAACTGTTTGAGAAAATCAACAGGGCTGTTATGGAGTGCAAGATTGGAGTGGCGGTTCTCTCGCCACGCTACACCGAGTCCTATTTTTGCCTACATGAGCTTGCACTTCTTCTGGGCTGCAACAAGAAGGTCATTCCCATCTTCTGCGACGTTAAGCCTTCGCAGTTGCGCGTTCTCAGCAACCCTAAGTGGTCTGAAGATGAAGTTCGACGATTCAGATTGGCTCTTGAGGAGGTTAAGTTCACCGTTGGACTCACGTTCAACTCCTCAAAAGGGAACTTTTCCGAAATTGTGAATAATAGTTGTGACATCATCATTGGCAGCATGATAGAGCTCCAGAATGAAGAGCGGATGCAGCGTAAAAACTTGCCAATTCCTCTTTAG 603 0.4743 MQRNMAMSFFQRRFFSQQRRTQMVARRVVEPCDVFLNHRCMDTKKTVATLLYDHLKRHGFNPFLDNKNMKPGDKLFEKINRAVMECKIGVAVLSPRYTESYFCLHELALLLGCNKKVIPIFCDVKPSQLRVLSNPKWSEDEVRRFRLALEEVKFTVGLTFNSSKGNFSEIVNNSCDIIIGSMIELQNEERMQRKNLPIPL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02476 200 PANTHER COP1-INTERACTING PROTEIN-RELATED 25 194 - -
Gma13g02476 200 Gene3D - 29 182 IPR035897 -
Gma13g02476 200 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 155 IPR035897 -
Gma13g02476 200 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 25 194 - -
Gma13g02476 200 SMART till_3 31 159 IPR000157 GO:0007165
Gma13g02476 200 ProSiteProfiles TIR domain profile. 30 149 IPR000157 GO:0007165
Gma13g02476 200 Pfam TIR domain 33 130 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02476 Gma-Chr13 39601018 39602139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02476 34 161 Miscellaneous Gene Families AT1G57670 34.028 8.69e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02476 - - gmx:100784606 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02476 13 39601018 39602139 Gma13g02476 13 39601018 39602139 ECH
Gma13g02476 13 39601018 39602139 Gma12g02085 12 41565620 41566844 GST