Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02085 ATGCAACGTAACATGGCAATGAGCTTCTTCCAGCGCAGGTTCTTCAGCCAGCAAAGGCGAACACAAATGGTGGCAAGGCGAGTGTTGGAGCCGTGTGACGTGTTCCTGAACCATAGGAGCATGGACACAAAGAAAACAGTAGCCACGTTGCTCTATGACCATTTGAAGAGGCACGGTTTCAACCCTTTCTTGGACAACAAGAACATGAAGCCAGGGGACAAACTGTTTGAGAAAATCAATAGGGCTGTTATGGAGTGCAAGATTGGGGTGGCGGTTCTCTCGCCACGCTACACGGAGTCCTATTTTTGCCTCCATGAGCTTGCACTTCTTCTGGGGTGCAACAAGAAGGTCATTCCCATCTTCTGTGATGTAAAGCCTTCGCAGTTGCGCGTTGTCAACAACCCTAAGTGGTCTGAAGATGAACTTAGACGCTTCAGACGGGCTCTTGAGGAGGTTAAGTTCACCGTGGGACTCACGTTCAACTCCTCAAAAGGGAACTTTTCTGAAATTGTGAATAGTAGTTCTGACATCATCATTGGCAGCATGATAGAGCTCAAGAATGAAGAGCGGATGCAGCGTAAAAACTTACAAATTCCTCTTTAG 603 0.4743 MQRNMAMSFFQRRFFSQQRRTQMVARRVLEPCDVFLNHRSMDTKKTVATLLYDHLKRHGFNPFLDNKNMKPGDKLFEKINRAVMECKIGVAVLSPRYTESYFCLHELALLLGCNKKVIPIFCDVKPSQLRVVNNPKWSEDELRRFRRALEEVKFTVGLTFNSSKGNFSEIVNSSSDIIIGSMIELKNEERMQRKNLQIPL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02085 200 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 156 IPR035897 -
Gma12g02085 200 Gene3D - 29 180 IPR035897 -
Gma12g02085 200 Pfam TIR domain 33 130 IPR000157 GO:0007165
Gma12g02085 200 PANTHER COP1-INTERACTING PROTEIN-RELATED 25 194 - -
Gma12g02085 200 ProSiteProfiles TIR domain profile. 30 153 IPR000157 GO:0007165
Gma12g02085 200 SMART till_3 31 155 IPR000157 GO:0007165
Gma12g02085 200 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 25 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02085 Gma-Chr12 41565620 41566844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02085 34 161 Miscellaneous Gene Families AT1G57670 34.028 1.26e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02085 - - gmx:100785101 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02085 12 41565620 41566844 Gma12g02085 12 41565620 41566844 ECH
Gma13g02476 13 39601018 39602139 Gma12g02085 12 41565620 41566844 GST