Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma13g02468 | ATGGATCGAATCCTGAAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGCTCCCTCACAGAAATTCCCGACGAGGTTTACCGGAATCTGGAGGGGCTCGGCGGCGACGACAAGTGGTGGGAGGCTGCGGAGCTTCAGAAGCTTATTCTGGCTCACAATAGCATTGCATCGTTGAAGGAAGATCTGAGGAATTTGCCTTTTCTTTCTGTGTTGAATCTTAGCCACAACTCTCTTTCTCAGCTTCCAGCTGCTATTGGAGAGCTGCCTCAGTTGAAGATGTTGGATGTTTCGTTCAATTCGATAGTTAAGATACCAGAAGAGATTGGATCGGCTGTGTCACTTGTGAAGCTTGATTGTTCAAATAATCGGCTCACGGAACTTCCTAGCTCGCTTGGCAGATGCTTAGAATTGTCGGACTTAAAGGGATCAAACAATCTTATTACAAACTTGCCAGAAGATTTAGCAAATTGTTCCAAATTGTCTAAGCTAGATATGGAGGGAAACAGGCTAACAGTGATGTCTGAAAATCTCATTTCATCATGGACCATGCTTACTGAATTCAATTCATCAAAAAATTTGCTGAATGGGATTCCAACCAGCATTGGAGGTCTTTCACGTCTAATCCGTCTTGACCTTCATCAAAACAGAATATCAGCAATCCCTTCATCAATCATCGGTTGTCATTCACTTACAGAGCTTTATTTGGGGAATAACAATATTTCTACATTACCGGTGGAAATAGGGGCCCTTTCTCGCCTTGGGACTTTAGATCTTCACTCTAACCAGCTGAAGGACTATCCAGTAGAGGCATGCAAATTGAGTCTTTTAGTCTTGGATCTTTCTAATAATTCATTGAGTGGGTTACCCCCTGAAATGGGCAAGATGACTACATTGAGGAAACTTTTGCTTAGTGGAAATCCTATGAGAACTCTTCGAAGCTCGTTAGTATCTGGACCTACACCAGCATTACTGAAATTTCTCCGAAGCAGACTTTCTGAAGATGAAGATTCTGAAGCAGTAACCACAACAAAAGAGGTGATCACAATGGCTACCCGATTGTCTATCTCTTCAAAGGAACTTTCGATGGAAGAGCTGGGGTTGAGTGCTGTCCCATCAGAAGTATGGGAATCAGGGGAGGTCATAAAACTTAATCTATCCAGAAACTCCATCCAGGAGTTGCCTGTTGAGCTTTCTTCTTGTGTTTCCCTCCAGACATTGATTTTATCTAAGAATCAAATTAAAGATTGGCCAGGTTCAATTCTTAAATCACTTTCGAGCCTTTCATGTTTGAAGCTGGATAACAATCCCCTCAGACAGATACCTTCAGATGGCTTTGAAATGGTGCCTAAGCTTCAGATCCTGGATCTAAGTGGTAATGCAGCTTCATTACTAGATGGTCCTGCATTTTCTAGTTTGCCATACCTGCAAGAGCTTTACCTAAGGAGAATGAGGCTCAGTGAAGTCCCATCAGATATAGTGGGGCTGCATCAGCTACGGATCCTTGACTTGAGTCAGAATTCCCTTCAATCAATTCCAGTGGGGCTAAAAGCTCTCACTTCTCTCCAGGAACTTGACCTATCTAATAACAACATTGCAGTCCTTCCGCCCGAGCTGGGTTTGCTGGAACCAAGCCTACAGGCACTGAGACTTGATGGGAATCCTCTCAGAAGCATTCGAAGAACTGTGTTGGATAAAGGAACTAAAGCTGTTCTGCAATATTTGAAGGACAAATTGCCAGAGCAATAG | 1752 | 0.4349 | MDRILKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGDDKWWEAAELQKLILAHNSIASLKEDLRNLPFLSVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVKIPEEIGSAVSLVKLDCSNNRLTELPSSLGRCLELSDLKGSNNLITNLPEDLANCSKLSKLDMEGNRLTVMSENLISSWTMLTEFNSSKNLLNGIPTSIGGLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNNNISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTLRKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVITMATRLSISSKELSMEELGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPGSILKSLSSLSCLKLDNNPLRQIPSDGFEMVPKLQILDLSGNAASLLDGPAFSSLPYLQELYLRRMRLSEVPSDIVGLHQLRILDLSQNSLQSIPVGLKALTSLQELDLSNNNIAVLPPELGLLEPSLQALRLDGNPLRSIRRTVLDKGTKAVLQYLKDKLPEQ | 583 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma13g02468 | 583 | SUPERFAMILY | L domain-like | 14 | 319 | - | - | |
| Gma13g02468 | 583 | Pfam | Leucine rich repeat | 475 | 533 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | Pfam | Leucine rich repeat | 404 | 461 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | Pfam | Leucine rich repeat | 208 | 265 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | Pfam | Leucine rich repeat | 46 | 103 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | ProSiteProfiles | Leucine-rich repeat profile. | 46 | 68 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | Gene3D | Ribonuclease Inhibitor | 1 | 176 | IPR032675 | - | |
| Gma13g02468 | 583 | ProSiteProfiles | Leucine-rich repeat profile. | 231 | 252 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | ProSiteProfiles | Leucine-rich repeat profile. | 499 | 521 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | Pfam | BspA type Leucine rich repeat region (6 copies) | 104 | 195 | IPR026906 | - | |
| Gma13g02468 | 583 | Pfam | Leucine Rich Repeat | 277 | 292 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | PRINTS | Leucine-rich repeat signature | 277 | 290 | - | - | |
| Gma13g02468 | 583 | PRINTS | Leucine-rich repeat signature | 520 | 533 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 114 | 136 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 230 | 251 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 206 | 229 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 403 | 425 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 67 | 88 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 252 | 275 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 380 | 402 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 545 | 567 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 450 | 473 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 474 | 496 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 426 | 449 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 276 | 296 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 159 | 182 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 497 | 519 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 90 | 113 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 297 | 320 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 520 | 543 | IPR003591 | - | |
| Gma13g02468 | 583 | SMART | LRR_typ_2 | 45 | 66 | IPR003591 | - | |
| Gma13g02468 | 583 | PANTHER | LEUCINE RICH REPEAT CONTAINING PROTEIN | 14 | 131 | - | - | |
| Gma13g02468 | 583 | PANTHER | LEUCINE RICH REPEAT CONTAINING PROTEIN | 212 | 583 | - | - | |
| Gma13g02468 | 583 | PANTHER | LEUCINE RICH REPEAT CONTAINING PROTEIN | 136 | 227 | - | - | |
| Gma13g02468 | 583 | SUPERFAMILY | L domain-like | 359 | 561 | - | - | |
| Gma13g02468 | 583 | ProSiteProfiles | Leucine-rich repeat profile. | 522 | 543 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | ProSiteProfiles | Leucine-rich repeat profile. | 276 | 297 | IPR001611 | GO:0005515 | |
| Gma13g02468 | 583 | PANTHER | LRR RECEPTOR-LIKE KINASE | 212 | 583 | - | - | |
| Gma13g02468 | 583 | PANTHER | LRR RECEPTOR-LIKE KINASE | 14 | 131 | - | - | |
| Gma13g02468 | 583 | PANTHER | LRR RECEPTOR-LIKE KINASE | 136 | 227 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 274 | 294 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 159 | 178 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 90 | 109 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 520 | 540 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 379 | 398 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 229 | 248 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 497 | 516 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 67 | 86 | - | - | |
| Gma13g02468 | 583 | SMART | LRR_bac_2 | 113 | 132 | - | - | |
| Gma13g02468 | 583 | Gene3D | Ribonuclease Inhibitor | 331 | 466 | IPR032675 | - | |
| Gma13g02468 | 583 | Gene3D | Ribonuclease Inhibitor | 177 | 270 | IPR032675 | - | |
| Gma13g02468 | 583 | Gene3D | Ribonuclease Inhibitor | 271 | 330 | IPR032675 | - | |
| Gma13g02468 | 583 | Gene3D | Ribonuclease Inhibitor | 467 | 579 | IPR032675 | - | |
| Gma13g02468 | 583 | ProSiteProfiles | Leucine-rich repeat profile. | 404 | 425 | IPR001611 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma13g02468 | Gma-Chr13 | 39486020 | 39494341 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma13g02468 | 198 | 555 | Receptor kinase-like Gene Family | AT4G08850 | 27.200 | 1.00e-06 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma13g02468 | - | - | gmx:100781571 | 1074.31 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma13g02468 | 13 | 39486020 | 39494341 | Gma13g02468 | 13 | 39486020 | 39494341 | ECH | |
| Gma13g02468 | 13 | 39486020 | 39494341 | Gma12g02093 | 12 | 41700310 | 41713260 | GST |